View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_119 (Length: 251)
Name: NF0778_low_119
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_119 |
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Alignment Details
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 98 - 222
Target Start/End: Complemental strand, 1798225 - 1798101
Alignment:
| Q |
98 |
tctcagcacccataattcttcaactattttgattccaatatcaaatcaaccatggaattgatatcaaattatatattagaataactaaaatttaatttat |
197 |
Q |
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||||||||| ||||||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1798225 |
tctcagcactcataattcttcaactttcctcattcaaatatcaaatcaaccatggaattgatatcaaattatatattagaataaccaaaatttaatttat |
1798126 |
T |
|
| Q |
198 |
aaaagttatgaacatagcaggatat |
222 |
Q |
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| T |
1798125 |
aaaagttatgaacatagcaggatat |
1798101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 12595444 - 12595507
Alignment:
| Q |
9 |
gatatgattaaaaatttgataagaataagatatgatagtgacaggatagacacatatcttatcac |
73 |
Q |
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| T |
12595444 |
gatatgataaaaagttggataaggataggatatgatagtgacatgata-acacttatcttatcac |
12595507 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 30793999 - 30793893
Alignment:
| Q |
110 |
taattcttcaactattttgattccaatatcaaatcaaccatggaattgatatcaaattatatattagaataactaaaatttaatttataaaagttatgaa |
209 |
Q |
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||||||||||||| | | ||||||| |||||||||||||||||| | |||| |||||||||||||||||||| | |||| |||||||||| ||||||| |
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| T |
30793999 |
taattcttcaactttcctcattccaaaatcaaatcaaccatggaacttatataaaattatatattagaataaccatgatttcatttataaaa-ttatgaa |
30793901 |
T |
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| Q |
210 |
catagcag |
217 |
Q |
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|||||||| |
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| T |
30793900 |
catagcag |
30793893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 4636675 - 4636554
Alignment:
| Q |
111 |
aattcttcaactattttgattccaatatcaaatcaaccatggaattgatatcaaattatat----------attagaataactaaaatttaatttataaa |
200 |
Q |
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| T |
4636675 |
aattcttcaactttttccattccaaaatcaaatcaacaatggaaatgatatcaacttatatggagtattagattagaataacaaaaatttaatttataaa |
4636576 |
T |
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| Q |
201 |
agttatgaacatagcaggatat |
222 |
Q |
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|| ||||||||||| ||||||| |
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| T |
4636575 |
agctatgaacatagaaggatat |
4636554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 222
Target Start/End: Complemental strand, 4644724 - 4644595
Alignment:
| Q |
98 |
tctcagcacccataattcttcaactattttgattccaatatcaaatcaaccatggaattgatatcaaattatatat-----tagaataactaaaatttaa |
192 |
Q |
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||||||||| | |||||||||| | ||| |||| || ||||||||||| |||||| ||||||||| ||||||| ||||||||| ||||| ||| |
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| T |
4644724 |
tctcagcactaacaattcttcaagtttttccattcaaaaatcaaatcaacaatggaactgatatcaacatatatattagattagaataaccaaaatataa |
4644625 |
T |
|
| Q |
193 |
tttataaaagttatgaacatagcaggatat |
222 |
Q |
| |
|
|||||||||| ||| ||||||||| ||||| |
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| T |
4644624 |
tttataaaagctataaacatagcatgatat |
4644595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 37433370 - 37433280
Alignment:
| Q |
129 |
attccaatatcaaatcaaccatggaattgatatcaaattatatat--tagaataactaaaatttaatttataaaagttatgaacatagcag |
217 |
Q |
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||||||| ||||||||||||||| || | |||| ||||||||||| ||||||||| | |||||||||||| ||||| |||||||||||| |
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| T |
37433370 |
attccaaaatcaaatcaaccatgaaacttatataaaattatatataatagaataaccatgatttaatttatataagttgtgaacatagcag |
37433280 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 6149178 - 6149240
Alignment:
| Q |
1 |
agagacatgatatgattaaaaatttgataagaataagatatgatagtgacaggatagacacat |
63 |
Q |
| |
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|||||||||||| ||| |||| || |||||| ||| ||||||||||||| |||||||| |||| |
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| T |
6149178 |
agagacatgataggataaaaagttggataaggatatgatatgatagtgataggatagagacat |
6149240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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