View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0778_low_12 (Length: 530)
Name: NF0778_low_12
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_12 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 175 - 530
Target Start/End: Complemental strand, 9248281 - 9247926
Alignment:
| Q |
175 |
ctaatcatgtatgtttagtgtttgtttgtgtctctggtatagaagattctcatttatcttctcagtgttaattgtcacagcaaatttatttaactttatg |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9248281 |
ctaatcatgtatgtttagtgtttgtttgtgtctctggtatagaagattctcatttatcttctcagtgttaattgtcacagcaaatttatttaactttatg |
9248182 |
T |
|
| Q |
275 |
aatgaatgatttctttgaaattatataaagtggttgattgataccatagtttattgtacttacagtaaaatggtggaatggttaagctgatgtagatatt |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9248181 |
aatgaatgatttctttgaaattatataaagtggttgattgataccatagtttattgtacttacagtaaaatggtagaatggttaagctgatgtagatatt |
9248082 |
T |
|
| Q |
375 |
aacagggttaaatttatgtaattgaaagtatattactatgcatgcatttctttcgacaagttcatctgagtggtaaggaactcaaacaacttaagatagt |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9248081 |
aacagggttaaatttatgtaattgaaagtatattactatgcatgcatttctttcgacaagttcatctgagtggtaaggaactcaaacaacttaagatagt |
9247982 |
T |
|
| Q |
475 |
ggttagaggtgaaaatcctgactcttatttatagaaaacactgttaaacggagatc |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9247981 |
ggttagaggtgaaaatcctgactcttatttatagaaaacactgttaaacggagatc |
9247926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 410 times since January 2019
Visitors: 5835