View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0778_low_120 (Length: 244)

Name: NF0778_low_120
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0778_low_120
NF0778_low_120
[»] chr4 (14 HSPs)
chr4 (1-119)||(2467613-2467731)
chr4 (6-112)||(2477658-2477761)
chr4 (1-111)||(2519312-2519422)
chr4 (1-53)||(2525945-2525997)
chr4 (1-53)||(5101951-5102003)
chr4 (1-56)||(2625296-2625351)
chr4 (1-56)||(2460671-2460726)
chr4 (6-49)||(2547613-2547656)
chr4 (1-48)||(5106223-5106270)
chr4 (1-54)||(2367600-2367653)
chr4 (1-50)||(2536682-2536731)
chr4 (4-53)||(12124907-12124956)
chr4 (4-53)||(12126963-12127012)
chr4 (1-53)||(5035810-5035862)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 2467731 - 2467613
Alignment:
Q  1 gttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgacaacggcgacaacaacatgttcaacaatattgatgaatatgggatgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467731 gttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgacaacggcgacaacaacatgttcaacaatattgatgaatatgggatgct 2467632  T
Q  101 agcttctaacctctctgct 119  Q
    |||||||||||||||||||    
T  2467631 agcttctaacctctctgct 2467613  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 2477761 - 2477658
Alignment:
Q  6 tatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgacaacggcgacaacaacatgttcaacaatattgatgaatatgggatgctagctt 105  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||||   |||||||||||||| | | || |||||| ||||||||||||||||||| ||    
T  2477761 tatttaccagaggagttgtgggagggcatcttcaaattcctcaacg---acggcgacaacaacttctacagcaatatggatgaatatgggatgctagatt 2477665  T
Q  106 ctaacct 112  Q
    |||||||    
T  2477664 ctaacct 2477658  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 2519422 - 2519312
Alignment:
Q  1 gttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgacaacggcgacaacaacatgttcaacaatattgatgaatatgggatgct 100  Q
    |||||||||||||  |||||||||||||||||||  |||| |||||||||||| | || ||| |||||   | |||||||||| |||| |||||||||||    
T  2519422 gttcatatttaccggaggagttatgggagcgcattgtcaagttcctcaacgacgagggagactacaaccactacaacaatattaatgagtatgggatgct 2519323  T
Q  101 agcttctaacc 111  Q
    || || |||||    
T  2519322 aggttttaacc 2519312  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2525997 - 2525945
Alignment:
Q  1 gttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgac 53  Q
    |||||||||||||| ||||||||||||| | ||||||||||||||||||||||    
T  2525997 gttcatatttaccagaggagttatgggaacacatcttcaaattcctcaacgac 2525945  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5101951 - 5102003
Alignment:
Q  1 gttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgac 53  Q
    |||||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  5101951 gttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgac 5102003  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2625296 - 2625351
Alignment:
Q  1 gttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgacaac 56  Q
    ||||| |||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  2625296 gttcagatttaccagaggagttatgggaacacatcttcaaattcctcaacgacaac 2625351  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 2460726 - 2460671
Alignment:
Q  1 gttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgacaac 56  Q
    ||||| |||||||| ||||  |||||||| ||||||||||||||||| ||||||||    
T  2460726 gttcacatttaccagaggaaatatgggagagcatcttcaaattcctcgacgacaac 2460671  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 2547656 - 2547613
Alignment:
Q  6 tatttaccaaaggagttatgggagcgcatcttcaaattcctcaa 49  Q
    ||||||||| | ||||||||||||| ||||||||||||||||||    
T  2547656 tatttaccagatgagttatgggagcacatcttcaaattcctcaa 2547613  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5106223 - 5106270
Alignment:
Q  1 gttcatatttaccaaaggagttatgggagcgcatcttcaaattcctca 48  Q
    |||||||||||||  | |||||||||||| ||||||||||||||||||    
T  5106223 gttcatatttaccggatgagttatgggagggcatcttcaaattcctca 5106270  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2367600 - 2367653
Alignment:
Q  1 gttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgaca 54  Q
    ||||||||||| || | ||||||||||||  |||||||||||| ||||||||||    
T  2367600 gttcatatttaacagatgagttatgggagatcatcttcaaatttctcaacgaca 2367653  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2536731 - 2536682
Alignment:
Q  1 gttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaac 50  Q
    |||||||||||||| |||||||||||||   |||||||||||| ||||||    
T  2536731 gttcatatttaccagaggagttatgggaatacatcttcaaatttctcaac 2536682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 12124956 - 12124907
Alignment:
Q  4 catatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgac 53  Q
    ||||||||||| | ||| ||||||||  ||||||||||||||||||||||    
T  12124956 catatttaccagatgagatatgggagatcatcttcaaattcctcaacgac 12124907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 12127012 - 12126963
Alignment:
Q  4 catatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgac 53  Q
    ||||||||||  | ||||||||||||  ||||||||||||||||||||||    
T  12127012 catatttacctgatgagttatgggagatcatcttcaaattcctcaacgac 12126963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 5035862 - 5035810
Alignment:
Q  1 gttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgac 53  Q
    ||||| |||||||| |||| ||||||||   ||||||||||||||||||||||    
T  5035862 gttcaaatttaccagaggatttatgggaaaacatcttcaaattcctcaacgac 5035810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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