View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0778_low_123 (Length: 228)

Name: NF0778_low_123
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0778_low_123
NF0778_low_123
[»] chr7 (1 HSPs)
chr7 (9-228)||(30149252-30149468)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 228
Target Start/End: Original strand, 30149252 - 30149468
Alignment:
Q  9 agtttgtcatggacttgagctgctttttgaacaatgtagtgatagcctgattctttttaacttcttctgcagattggggacctaacattgacattgttgg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  30149252 agtttgtcatggacttgagctgctttttgaacaatgtagtgatagcctgattctttttaacttc---tgcagattggggacctaacattgacattgttgg 30149348  T
Q  109 cttttgtttcctcgaccttgcttcaaattatgaaccaccaaaatcgctagtagattggcttgaagaaggagaaaaccctatctatgttggatttggtagt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30149349 cttttgtttcctcgaccttgcttcaaattatgaaccaccaaaatcgctagtagattggcttgaagaaggagaaaaccctatctatgttggatttggtagt 30149448  T
Q  209 ctcgtgagtttctataacta 228  Q
    ||||||||||||||||||||    
T  30149449 ctcgtgagtttctataacta 30149468  T

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