View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_13 (Length: 513)
Name: NF0778_low_13
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 83 - 486
Target Start/End: Original strand, 36572863 - 36573267
Alignment:
| Q |
83 |
gatatatacacgcttgacattttaatttctnnnnnnnntcagtaattacacatgtggcatgctacttagatgttgattgggttagaattgagtaaaaatg |
182 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36572863 |
gatatatacacgcttgacattttaatttctaaaaaaaatcagtaattacacatgtggcatgctacttagatgttgattgggttagaattgagtaaaaatg |
36572962 |
T |
|
| Q |
183 |
taaaatgactaattgcaaatgggctaaaacatatggttccaaatttacaagtttaaataaaattgatctttctctaagtttgatattaatttaaattaag |
282 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36572963 |
taaaatgactaattgcaaatgggctaaaacatatggttccaaatttacaagtttaaataaaattgatctttctctaagtttgatattaatttaaattaag |
36573062 |
T |
|
| Q |
283 |
atatata-aacttttgtcttaattttacatgctcaactcacttataaaagtaatttagtaaaattatctaaatataaaatgaaattaaagcagggagact |
381 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36573063 |
atatatataacttttgtcttaattttacatgctcaactcacttataaaagtaatttagtaaaattatctaaatataaaatgaaattaaagcagggagact |
36573162 |
T |
|
| Q |
382 |
cttcaacaataaggttccatttcattctcatcagctggacattcttcgtgcctacgaatttgggctttccttgctggtgaaactctggtttacgtgtccc |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36573163 |
cttcaacaataaggttccatttcattctcatcagctggacattcttcgtgcctacgaatttgggctttccttgctggtgaaactctggtttacgtgtccc |
36573262 |
T |
|
| Q |
482 |
tcatg |
486 |
Q |
| |
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||||| |
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|
| T |
36573263 |
tcatg |
36573267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 3597492 - 3597436
Alignment:
| Q |
123 |
agtaattacacatgtggcatgctacttagatgttgattgggttagaattgagtaaaa |
179 |
Q |
| |
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|||||||||||||||||||||| ||||||| ||||| | ||| | |||||| ||||| |
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| T |
3597492 |
agtaattacacatgtggcatgccacttagaagttgactaggtcaaaattgactaaaa |
3597436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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