View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_136 (Length: 213)
Name: NF0778_low_136
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_136 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 4 - 208
Target Start/End: Original strand, 12888691 - 12888894
Alignment:
| Q |
4 |
gtagtttctcacagtgtgagatctcgaccgttcacatccaatcaaacaaacccagattaataactgcatccatgcagtaactgtgttaaatcaatatcta |
103 |
Q |
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| T |
12888691 |
gtagtttctcacagtgtgagatctcgaccgttcacttccaatcaaacaa-cccagattaataactgcatccatgcagtaactgtgttaaatcaatatcta |
12888789 |
T |
|
| Q |
104 |
gaccgtttgaatatatttggttaagcctttttggtcctcccatgagtgtaatgtaggacaatcagtttggtnnnnnnngtgacacagataggagtctctg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12888790 |
gaccgtttgaatatatttggttaagcctttttggtcctcccatgagtgttatgtaggacaatcagtttggtaaaaaaagtgacacagataggagtctctg |
12888889 |
T |
|
| Q |
204 |
ctcct |
208 |
Q |
| |
|
|||| |
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|
| T |
12888890 |
atcct |
12888894 |
T |
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