View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0778_low_146 (Length: 209)

Name: NF0778_low_146
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0778_low_146
NF0778_low_146
[»] chr3 (23 HSPs)
chr3 (1-129)||(1740799-1740927)
chr3 (27-124)||(6025445-6025542)
chr3 (29-129)||(21494027-21494127)
chr3 (1-122)||(795094-795214)
chr3 (76-129)||(26928885-26928938)
chr3 (82-129)||(3034232-3034279)
chr3 (82-129)||(3693207-3693254)
chr3 (82-129)||(8883759-8883806)
chr3 (82-129)||(8888519-8888566)
chr3 (82-129)||(18467826-18467873)
chr3 (82-129)||(32473458-32473505)
chr3 (82-129)||(39775162-39775209)
chr3 (27-129)||(26962335-26962437)
chr3 (81-129)||(10585647-10585695)
chr3 (82-129)||(3673175-3673222)
chr3 (82-129)||(8070268-8070315)
chr3 (82-129)||(14438134-14438181)
chr3 (82-129)||(18472620-18472667)
chr3 (27-98)||(38436674-38436745)
chr3 (27-101)||(20810677-20810751)
chr3 (32-90)||(26707089-26707147)
chr3 (88-132)||(6595857-6595901)
chr3 (85-129)||(8223524-8223568)
[»] chr4 (13 HSPs)
chr4 (27-129)||(30564129-30564231)
chr4 (27-129)||(10318491-10318593)
chr4 (27-129)||(24490309-24490411)
chr4 (31-129)||(17359775-17359872)
chr4 (82-129)||(3997520-3997567)
chr4 (82-129)||(41817371-41817418)
chr4 (27-129)||(10120297-10120399)
chr4 (81-129)||(34561013-34561061)
chr4 (58-129)||(3258381-3258452)
chr4 (82-129)||(5270858-5270905)
chr4 (82-129)||(5927652-5927699)
chr4 (29-129)||(10120527-10120627)
chr4 (85-129)||(14899077-14899121)
[»] chr8 (12 HSPs)
chr8 (1-123)||(33848291-33848413)
chr8 (81-129)||(25367443-25367491)
chr8 (81-129)||(37772296-37772344)
chr8 (83-129)||(4237800-4237846)
chr8 (83-129)||(4242539-4242585)
chr8 (81-129)||(8330820-8330868)
chr8 (81-129)||(34818163-34818211)
chr8 (82-129)||(31449323-31449370)
chr8 (27-129)||(19566438-19566540)
chr8 (82-124)||(21411617-21411659)
chr8 (82-124)||(21806109-21806151)
chr8 (27-89)||(31030846-31030908)
[»] chr7 (12 HSPs)
chr7 (27-129)||(47761903-47762005)
chr7 (82-124)||(8076644-8076686)
chr7 (82-129)||(26341821-26341868)
chr7 (82-129)||(47102128-47102175)
chr7 (88-129)||(19096843-19096884)
chr7 (81-129)||(19640888-19640936)
chr7 (81-129)||(27256826-27256874)
chr7 (81-129)||(40864820-40864868)
chr7 (27-98)||(33226655-33226726)
chr7 (27-129)||(9973739-9973841)
chr7 (32-124)||(7874816-7874909)
chr7 (82-118)||(36477577-36477613)
[»] chr6 (11 HSPs)
chr6 (27-129)||(3902551-3902652)
chr6 (27-129)||(11956419-11956521)
chr6 (29-129)||(3902193-3902292)
chr6 (30-124)||(5600690-5600784)
chr6 (29-121)||(17281283-17281375)
chr6 (82-129)||(17963993-17964040)
chr6 (82-129)||(6112217-6112264)
chr6 (82-129)||(19772470-19772517)
chr6 (82-129)||(27324517-27324564)
chr6 (29-118)||(29325827-29325915)
chr6 (29-101)||(29326019-29326090)
[»] chr5 (19 HSPs)
chr5 (31-129)||(31987003-31987101)
chr5 (81-129)||(32461001-32461049)
chr5 (81-129)||(36941722-36941770)
chr5 (82-129)||(557285-557332)
chr5 (82-129)||(562057-562104)
chr5 (82-129)||(13300948-13300995)
chr5 (82-129)||(26667892-26667939)
chr5 (82-129)||(26939489-26939536)
chr5 (82-129)||(29167407-29167454)
chr5 (82-129)||(36936969-36937016)
chr5 (75-129)||(26869765-26869819)
chr5 (81-129)||(31732126-31732174)
chr5 (82-129)||(12044593-12044640)
chr5 (82-129)||(41997253-41997300)
chr5 (82-129)||(42002022-42002069)
chr5 (82-124)||(36430230-36430272)
chr5 (85-129)||(7452367-7452411)
chr5 (82-122)||(8770839-8770879)
chr5 (81-129)||(21323433-21323481)
[»] chr2 (11 HSPs)
chr2 (30-124)||(27556850-27556944)
chr2 (81-129)||(17968396-17968444)
chr2 (68-124)||(44683388-44683444)
chr2 (82-129)||(10160178-10160225)
chr2 (82-129)||(18345025-18345072)
chr2 (76-129)||(6297344-6297397)
chr2 (82-129)||(377748-377795)
chr2 (50-129)||(5771208-5771287)
chr2 (32-78)||(39543197-39543243)
chr2 (85-129)||(24286355-24286399)
chr2 (85-129)||(24292923-24292967)
[»] scaffold0061 (1 HSPs)
scaffold0061 (81-129)||(49441-49489)
[»] scaffold0017 (1 HSPs)
scaffold0017 (81-129)||(149145-149193)
[»] chr1 (11 HSPs)
chr1 (81-129)||(10140707-10140755)
chr1 (82-129)||(16836744-16836791)
chr1 (82-129)||(26927155-26927202)
chr1 (82-129)||(41097416-41097463)
chr1 (75-129)||(26198947-26199001)
chr1 (86-129)||(1067070-1067113)
chr1 (82-129)||(3094678-3094725)
chr1 (82-129)||(10135939-10135986)
chr1 (82-129)||(41387433-41387480)
chr1 (87-124)||(14724534-14724571)
chr1 (29-101)||(39747002-39747074)
[»] scaffold0060 (2 HSPs)
scaffold0060 (81-129)||(47430-47478)
scaffold0060 (81-129)||(52374-52422)
[»] scaffold0041 (1 HSPs)
scaffold0041 (81-129)||(35161-35209)
[»] scaffold0628 (1 HSPs)
scaffold0628 (82-129)||(6977-7024)
[»] scaffold0067 (1 HSPs)
scaffold0067 (30-129)||(33684-33783)
[»] scaffold0015 (1 HSPs)
scaffold0015 (82-129)||(193725-193772)
[»] scaffold1910 (1 HSPs)
scaffold1910 (84-129)||(455-500)
[»] scaffold0357 (1 HSPs)
scaffold0357 (85-129)||(3808-3852)
[»] scaffold0182 (1 HSPs)
scaffold0182 (82-129)||(9338-9386)
[»] scaffold0155 (1 HSPs)
scaffold0155 (85-129)||(22264-22308)
[»] scaffold0044 (1 HSPs)
scaffold0044 (85-129)||(64749-64793)
[»] scaffold0020 (1 HSPs)
scaffold0020 (81-129)||(697-745)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 1740799 - 1740927
Alignment:
Q  1 tttagagttaatccatttaaatactccgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttg 100  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1740799 tttagagttaattcatttaaatactctgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttg 1740898  T
Q  101 aggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||| ||||||||||| ||||    
T  1740899 aggcttcatgtgcttttcctctcttctcc 1740927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 6025542 - 6025445
Alignment:
Q  27 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 124  Q
    ||||||||||||| |||||| | ||||||| ||| | ||||| |||| ||||||||||||||| ||||||||||| | || |||||||||||||||||    
T  6025542 cgttttttgttacaaactctccctataaaaggagggctcgtcccactcattctttacaccgaatttcacagttgatgatttatgtgtttttcctctct 6025445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 21494027 - 21494127
Alignment:
Q  29 ttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctc 128  Q
    |||||||||||||| ||||| ||||||| ||||  ||| | |||| ||||||  ||||||||||||||||||| | |||||||| ||||||||||| |||    
T  21494027 ttttttgttacgaattcttcctataaaaggagatctcgccccactcattcttaccaccgaaattcacagttgatgattcatgtgcttttcctctcttctc 21494126  T
Q  129 c 129  Q
    |    
T  21494127 c 21494127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 795094 - 795214
Alignment:
Q  1 tttagagttaatccatttaaatactccgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttg 100  Q
    |||||||||||||| |||||  ||||  |||| |||||||| |||| | ||||||| ||||  ||  ||||| |||||||||||| ||||||||||||||    
T  795094 tttagagttaatccctttaatcactctatttt-tgttacgatctctccctataaaaggagaactcccctcacctattctttacactgaaattcacagttg 795192  T
Q  101 aggcttcatgtgtttttcctct 122  Q
    | |||||||| | |||||||||    
T  795193 atgcttcatgcgcttttcctct 795214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 26928938 - 26928885
Alignment:
Q  76 ttctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||||||||| | |||||||| ||||||||||| ||||    
T  26928938 ttctttacaccgaaattcacagttgatgattcatgtgcttttcctctcttctcc 26928885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 3034279 - 3034232
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  3034279 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 3034232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 3693254 - 3693207
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  3693254 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 3693207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 8883806 - 8883759
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  8883806 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 8883759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 8888566 - 8888519
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  8888566 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 8888519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 18467873 - 18467826
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  18467873 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 18467826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 32473458 - 32473505
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  32473458 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 32473505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 39775162 - 39775209
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  39775162 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 39775209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 26962437 - 26962335
Alignment:
Q  27 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgc 126  Q
    ||||||||||||| |||||||| ||||||| ||||| ||| | ||||   |||||||||  ||||||||| | || | ||| |||||||||||||||| |    
T  26962437 cgttttttgttacaaactcttcctataaaaggagagctcgccccactccatctttacactaaaattcacaatcgatgattcctgtgtttttcctctcttc 26962338  T
Q  127 tcc 129  Q
    |||    
T  26962337 tcc 26962335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 10585647 - 10585695
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||| |||||||||||||| ||||| |||||||||||||||| ||||    
T  10585647 tacaccaaaattcacagttgatgcttcctgtgtttttcctctcttctcc 10585695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 3673222 - 3673175
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||| ||||||||||||||| ||||| |||||||||||||||| ||||    
T  3673222 acactgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 3673175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 8070315 - 8070268
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| ||| |||||||||||| ||||    
T  8070315 acaccgaaattcacagttgatgcttcctgtatttttcctctcttctcc 8070268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 14438134 - 14438181
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||| ||||| ||||    
T  14438134 acaccgaaattcacagttgatgcttcctgtgtttttcttctcttctcc 14438181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 18472667 - 18472620
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||| | ||||| |||||||||||||||| ||||    
T  18472667 acaccgaaattcacagttaatgcttcctgtgtttttcctctcttctcc 18472620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 38436674 - 38436745
Alignment:
Q  27 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagt 98  Q
    ||||||||||||||||||| || ||||||| ||||| ||| | | || |||||| |||||||| ||||||||    
T  38436674 cgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacaccgaatttcacagt 38436745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 20810751 - 20810677
Alignment:
Q  27 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttga 101  Q
    |||||||||||||||||||||| ||||||| ||||| ||| | | || |||||| ||||| || ||| |||||||    
T  20810751 cgttttttgttacgaactcttcctataaaaggagagctcgcccccctcattcttcacaccaaatttcgcagttga 20810677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 26707147 - 26707089
Alignment:
Q  32 tttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaa 90  Q
    ||||||||||| ||| | ||||||| ||||| | | |||||||||||||||||||||||    
T  26707147 tttgttacgaagtctacctataaaaagagaggttgcctcacttattctttacaccgaaa 26707089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 6595857 - 6595901
Alignment:
Q  88 aaattcacagttgaggcttcatgtgtttttcctctctgctccttc 132  Q
    ||||||| |||||| ||||| |||||||||||||||| |||||||    
T  6595857 aaattcatagttgatgcttcctgtgtttttcctctcttctccttc 6595901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 8223568 - 8223524
Alignment:
Q  85 ccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  8223568 ccgaaattcacagttgatgcttcctgtgcttttcctctcttctcc 8223524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 30564129 - 30564231
Alignment:
Q  27 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgc 126  Q
    |||||||||||||||||||| | ||||||| ||||| ||||| |||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |    
T  30564129 cgttttttgttacgaactctccctataaaaggagagctcgtcccactcattctttacaccgaaattcacagttgatgattcatgtgtttttcctctcttc 30564228  T
Q  127 tcc 129  Q
    |||    
T  30564229 tcc 30564231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 10318491 - 10318593
Alignment:
Q  27 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgc 126  Q
    ||||||||||||| |||||| | ||||||| ||||| ||  |  ||| ||||||||||||||||||||||||| | | ||||| |||||||||||||| |    
T  10318491 cgttttttgttacaaactctgcctataaaaggagagctcccccaactcattctttacaccgaaattcacagttcatgattcatttgtttttcctctcttc 10318590  T
Q  127 tcc 129  Q
    |||    
T  10318591 tcc 10318593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 24490411 - 24490309
Alignment:
Q  27 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgc 126  Q
    |||||||||||||||||||| | ||||||| ||||| | |   |||| |||||| |||||||||||||||||||| | ||| |||| ||||||||||| |    
T  24490411 cgttttttgttacgaactctccctataaaaggagagcttgctccactcattcttcacaccgaaattcacagttgatgattcttgtgcttttcctctcttc 24490312  T
Q  127 tcc 129  Q
    |||    
T  24490311 tcc 24490309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 17359872 - 17359775
Alignment:
Q  31 ttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||   ||||||| ||||||||| |||||||||| || |||| ||||||| ||||||| | |||||||| |||| |||||| ||||    
T  17359872 ttttgttacgaactctcactataaaaggagagttcgcctcacttattattgacactgaaattc-cagttgatgtttcatgtgctttttctctcttctcc 17359775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 3997520 - 3997567
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  3997520 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 3997567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 41817418 - 41817371
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  41817418 acaccgaaattcacagttgatgcttcttgtgtttttcctctcttctcc 41817371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 10120297 - 10120399
Alignment:
Q  27 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgc 126  Q
    |||||||||||||||||||||| ||||||| ||||| ||| | | || |||||  |||||||| |||||||| || | ||| |||||  ||||||||| |    
T  10120297 cgttttttgttacgaactcttcctataaaaggagagctcgcccccctcattctacacaccgaatttcacagtcgatgattcctgtgtgattcctctcttc 10120396  T
Q  127 tcc 129  Q
    |||    
T  10120397 tcc 10120399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 34561061 - 34561013
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  34561061 tacaccgaaattcacagttgatgcttcctgtgcttttcctctcttctcc 34561013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 3258452 - 3258381
Alignment:
Q  58 gagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||| |||||| |||||| |||| ||||  |||| |||| | |||||||||||||||||||| ||||    
T  3258452 gagagttcgcctcactcattcttcacactgaaaaacacatttgatgtttcatgtgtttttcctctcttctcc 3258381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 5270858 - 5270905
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||| ||||| ||||    
T  5270858 acaccgaaattcacagttgatgcttcctgtgtttttcttctcttctcc 5270905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 5927652 - 5927699
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||| ||||||||||||||| ||||| |||||||||||||||| ||||    
T  5927652 acactgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 5927699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 10120527 - 10120627
Alignment:
Q  29 ttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctc 128  Q
    |||||||||||||||||||| ||||||| ||||| ||| | | || |||||  |||||||| ||| |||| || | ||| |||||  ||||||||| |||    
T  10120527 ttttttgttacgaactcttcctataaaaggagagctcgcccccctcattctacacaccgaatttcgcagtcgatgattcctgtgtgattcctctctactc 10120626  T
Q  129 c 129  Q
    |    
T  10120627 c 10120627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 14899077 - 14899121
Alignment:
Q  85 ccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||| | |||||||| ||||||||||| ||||    
T  14899077 ccgaaattcacagttgatgattcatgtgcttttcctctcttctcc 14899121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 33848413 - 33848291
Alignment:
Q  1 tttagagttaatccatttaaatactccgttttttgttacgaa-ctcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagtt 99  Q
    |||||||||||||| || ||  |||||||||||||||||||| |||| | ||||||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  33848413 tttagagttaatcccttaaatcactccgttttttgttacgaaactctccctataaaaggagagctcgcctcacttattctttacaccgaaattcacagtt 33848314  T
Q  100 gaggcttcatgtgtttttcctctc 123  Q
    |||| ||| |||| ||||||||||    
T  33848313 gagg-ttcttgtgcttttcctctc 33848291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 25367443 - 25367491
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||| |||| |||||||||||||||||||||| ||||    
T  25367443 tacaccgaaattcacaattgatgcttcatgtgtttttcctctcttctcc 25367491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 37772344 - 37772296
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  37772344 tacaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 37772296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 4237800 - 4237846
Alignment:
Q  83 caccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  4237800 caccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 4237846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 4242539 - 4242585
Alignment:
Q  83 caccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  4242539 caccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 4242585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 8330820 - 8330868
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  8330820 tacaccgaaattcacagttgatgcttcctgtgcttttcctctcttctcc 8330868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 34818163 - 34818211
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  34818163 tacaccgaaattcacagttgatgcttcctgtgcttttcctctcttctcc 34818211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 31449323 - 31449370
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||  |||||||||||||||| ||||    
T  31449323 acaccgaaattcacagttgatgctttctgtgtttttcctctcttctcc 31449370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 19566540 - 19566438
Alignment:
Q  27 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgc 126  Q
    |||||||||||| |||||| || ||||||| ||||| ||| | | || |||||||||| |||| ||| ||||||| | ||||||||   ||||||||| |    
T  19566540 cgttttttgttatgaactcctcctataaaaggagagctcgcccccctcattctttacatcgaatttcgcagttgatgattcatgtgcgattcctctcttc 19566441  T
Q  127 tcc 129  Q
    |||    
T  19566440 tcc 19566438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 21411659 - 21411617
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 124  Q
    |||||||||||||||||||| |||||||||| ||||| |||||    
T  21411659 acaccgaaattcacagttgatgcttcatgtgcttttcttctct 21411617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 21806151 - 21806109
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 124  Q
    |||||||||||||||||||| |||||||||| ||||| |||||    
T  21806151 acaccgaaattcacagttgatgcttcatgtgcttttcttctct 21806109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 31030908 - 31030846
Alignment:
Q  27 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaa 89  Q
    ||||||||||||||||||| || ||||||| ||||| ||| | | || |||||||||||||||    
T  31030908 cgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattctttacaccgaa 31030846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 8e-23; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 47762005 - 47761903
Alignment:
Q  27 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgc 126  Q
    |||||||||||||||||||| | ||||||||||||| ||| | |||| |||||||||||||||||||||| |||| | |||||||| || |||||||| |    
T  47762005 cgttttttgttacgaactctgcctataaaatgagagctcgccccactcattctttacaccgaaattcacaattgatgattcatgtgcttctcctctcttc 47761906  T
Q  127 tcc 129  Q
    |||    
T  47761905 tcc 47761903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 8076686 - 8076644
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 124  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  8076686 acaccgaaattcacagttgatgcttcatgtgtttttcctctct 8076644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 26341868 - 26341821
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  26341868 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 26341821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 47102175 - 47102128
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  47102175 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 47102128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 19096884 - 19096843
Alignment:
Q  88 aaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  19096884 aaattcacagttgatgcttcatgtgtttttcctctcttctcc 19096843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 19640936 - 19640888
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  19640936 tacaccgaaattcacagttgatgcttcttgtgcttttcctctcttctcc 19640888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 27256874 - 27256826
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  27256874 tacaccgaaattcacagttgatgcttcctgtgcttttcctctcttctcc 27256826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 40864820 - 40864868
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  40864820 tacaccgaaattcacagttgatgcttcctgtgcttttcctctcttctcc 40864868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 33226726 - 33226655
Alignment:
Q  27 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagt 98  Q
    ||||||||||||||||||| || ||||||| ||||| ||| | | || ||||||||||||||| | ||||||    
T  33226726 cgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattctttacaccgaattccacagt 33226655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 9973841 - 9973739
Alignment:
Q  27 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgc 126  Q
    ||||||||||||| |||||||| ||||||| ||||| |||   | || |||||| |||||||| ||| ||||||| | ||||||||   ||||||||| |    
T  9973841 cgttttttgttacaaactcttcctataaaaggagagctcgctcccctcattcttaacaccgaatttcgcagttgatgattcatgtgcgattcctctcttc 9973742  T
Q  127 tcc 129  Q
    |||    
T  9973741 tcc 9973739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 7874816 - 7874909
Alignment:
Q  32 tttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccg-aaattcacagttgaggcttcatgtgtttttcctctct 124  Q
    ||||||||||||| | | | ||||| ||||| ||| ||||||||||||| |||||| |||  |||||||||  ||||||||| || ||||||||    
T  7874816 tttgttacgaactttccctttaaaaggagagctcgcctcacttattcttcacaccgaaaaaacacagttgattcttcatgtgcttatcctctct 7874909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 36477613 - 36477577
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttc 118  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  36477613 acaccgaaattcacagttgatgcttcctgtgtttttc 36477577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 8e-23; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 3902652 - 3902551
Alignment:
Q  27 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgc 126  Q
    |||||||||||||||||||| | ||||||| ||||||||  | |||| ||||||||||| ||||||||||||||| | |||||||||||||||||||| |    
T  3902652 cgttttttgttacgaactctgcctataaaaggagagttcc-cgcactcattctttacactgaaattcacagttgatgattcatgtgtttttcctctcttc 3902554  T
Q  127 tcc 129  Q
    |||    
T  3902553 tcc 3902551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 11956419 - 11956521
Alignment:
Q  27 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgc 126  Q
    |||||||||||||||||||| | ||||||| ||||| ||  | |||| ||||||||||||||||||||||||||| | ||| |||| ||||||||||| |    
T  11956419 cgttttttgttacgaactctacctataaaaggagagctctccccactcattctttacaccgaaattcacagttgatgattcctgtgcttttcctctcttc 11956518  T
Q  127 tcc 129  Q
    |||    
T  11956519 tcc 11956521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 3902292 - 3902193
Alignment:
Q  29 ttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctc 128  Q
    |||||||||||||||||| | ||||||| ||||||||  | |||| ||||||||||| |||||||||| |||| | |||||||||||||||||||| |||    
T  3902292 ttttttgttacgaactctgcctataaaaggagagttcccc-cactcattctttacactgaaattcacaattgatgattcatgtgtttttcctctcttctc 3902194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 5600690 - 5600784
Alignment:
Q  30 tttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 124  Q
    |||||||||| |||||| | ||||||| ||||| | | |||||||||||||||| |||||||||| | |||| |||||  |||||||||||||||    
T  5600690 tttttgttacaaactctccctataaaaggagagcttgcctcacttattctttactccgaaattcataattgatgcttccagtgtttttcctctct 5600784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 17281283 - 17281375
Alignment:
Q  29 ttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctc 121  Q
    ||||||||||| |||||| | ||||||| ||||| ||  | |||| |||||| ||||||||||||| |||||| ||||| |||| ||||||||    
T  17281283 ttttttgttacaaactctccctataaaaggagagctcaccccactcattcttaacaccgaaattcatagttgatgcttcctgtgcttttcctc 17281375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 17963993 - 17964040
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  17963993 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 17964040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 6112217 - 6112264
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  6112217 acaccgaaattcacagttgatgcttcttgtgcttttcctctcttctcc 6112264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 19772470 - 19772517
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| |||||||||| ||||| ||||| ||||    
T  19772470 acaccgaaattcacagttgatgcttcatgtgcttttcttctcttctcc 19772517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 27324517 - 27324564
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||| ||||| ||||    
T  27324517 acaccgaaattcacagttgatgcttcctgtgtttttcttctcttctcc 27324564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 29325915 - 29325827
Alignment:
Q  29 ttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttc 118  Q
    |||||||||||||||||  | ||||||| ||||| ||  | |||| |||||||||||||||||||| |||||| | ||| |||| |||||    
T  29325915 ttttttgttacgaactcagcctataaaaggagagctcccc-cactcattctttacaccgaaattcatagttgatgattcctgtgcttttc 29325827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 29326090 - 29326019
Alignment:
Q  29 ttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttga 101  Q
    |||||||||||||||||| | ||||||| ||||| ||  | |||| |||||||||| ||||||||| ||||||    
T  29326090 ttttttgttacgaactctgcctataaaaggagagctc-ccccactcattctttacagcgaaattcatagttga 29326019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 31987101 - 31987003
Alignment:
Q  31 ttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||   ||||||| ||||| ||| |||||||||||||||| ||||| ||||||||||| | ||| |||||||||||||||| ||||    
T  31987101 ttttgttacgaactctcactataaaaggagagctcgcctcacttattctttacgccgaagttcacagttgatgtttcttgtgtttttcctctcttctcc 31987003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 32461001 - 32461049
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  32461001 tacaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 32461049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 36941722 - 36941770
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  36941722 tacaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 36941770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 557332 - 557285
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  557332 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 557285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 562104 - 562057
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  562104 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 562057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 13300948 - 13300995
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  13300948 acaccgaaattcacagttgatgcttcatgtgcttttcctctcttctcc 13300995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 26667939 - 26667892
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  26667939 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 26667892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 26939536 - 26939489
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  26939536 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 26939489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 29167407 - 29167454
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  29167407 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 29167454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 36936969 - 36937016
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  36936969 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 36937016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 26869765 - 26869819
Alignment:
Q  75 attctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||| ||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  26869765 attctgtacaccgaaattcacagttgatgcttcctgtgcttttcctctcttctcc 26869819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 31732174 - 31732126
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  31732174 tacaccgaaattcacagttgatgcttcctgtgcttttcctctcttctcc 31732126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 12044593 - 12044640
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||| |||||| ||||| |||||||||||||||| ||||    
T  12044593 acaccgaaattcaaagttgatgcttcctgtgtttttcctctcttctcc 12044640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 41997300 - 41997253
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||| ||||| ||||    
T  41997300 acaccgaaattcacagttgatgcttcctgtgtttttcttctcttctcc 41997253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 42002069 - 42002022
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||| ||||| ||||    
T  42002069 acaccgaaattcacagttgatgcttcctgtgtttttcttctcttctcc 42002022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 36430272 - 36430230
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 124  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||    
T  36430272 acaccgaaattcatagttgatgcttcctgtgtttttcctctct 36430230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 7452411 - 7452367
Alignment:
Q  85 ccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||| ||||| |||||||||| ||||| ||||    
T  7452411 ccgaaattcacagttgatgcttcctgtgtttttcttctcttctcc 7452367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 8770879 - 8770839
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctct 122  Q
    |||| ||||||||||||||| ||||| ||||||||||||||    
T  8770879 acactgaaattcacagttgatgcttcctgtgtttttcctct 8770839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 21323433 - 21323481
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||  ||||||||||| ||||    
T  21323433 tacaccgaaattcacagttgatgcttcctgtacttttcctctcttctcc 21323481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 27556944 - 27556850
Alignment:
Q  30 tttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 124  Q
    |||||||||||||||||   || |||| ||||| ||| |||||||||  ||||| || |||||||||||||| |||||||||| |||||||||||    
T  27556944 tttttgttacgaactctcgctagaaaaggagagctcgcctcacttatcttttaccccaaaattcacagttgatgcttcatgtgcttttcctctct 27556850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 17968396 - 17968444
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  17968396 tacaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 17968444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 44683444 - 44683388
Alignment:
Q  68 ctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 124  Q
    ||||||||| |||||| |||||||| |||||||| ||||| ||||||||||||||||    
T  44683444 ctcacttatcctttaccccgaaattgacagttgatgcttcttgtgtttttcctctct 44683388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 10160178 - 10160225
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  10160178 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 10160225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 18345072 - 18345025
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  18345072 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 18345025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 6297344 - 6297397
Alignment:
Q  76 ttctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||| ||||| ||||||||||||||| |||||||||| ||||||||||| ||||    
T  6297344 ttctatacacagaaattcacagttgatgcttcatgtgcttttcctctcttctcc 6297397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 377748 - 377795
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||| ||||| ||||    
T  377748 acaccgaaattcacagttgatgcttcctgtgtttttcttctcttctcc 377795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 5771287 - 5771208
Alignment:
Q  50 tataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||| ||||  ||||||||||||||||  |||||||||  |||||| || ||||| |||| ||||||||||| ||||    
T  5771287 tataaaaggagaactcgtctcacttattctgcacaccgaaaaacacagtagatgcttcgtgtgcttttcctctcttctcc 5771208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 39543243 - 39543197
Alignment:
Q  32 tttgttacgaactcttcatataaaatgagagttcgtctcacttattc 78  Q
    |||||||||| |||| ||||||||| ||||||||| |||||||||||    
T  39543243 tttgttacgagctctgcatataaaaggagagttcgcctcacttattc 39543197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 24286355 - 24286399
Alignment:
Q  85 ccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  24286355 ccgaaattcacagttgatgcttcctgtgcttttcctctcttctcc 24286399  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 24292923 - 24292967
Alignment:
Q  85 ccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  24292923 ccgaaattcacagttgatgcttcctgtgcttttcctctcttctcc 24292967  T

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Target: scaffold0061 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 49441 - 49489
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  49441 tacaccgaaattcacagttgacgcttcctgtgtttttcctctcttctcc 49489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 149193 - 149145
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  149193 tacaccgaaattcacagttgacgcttcctgtgtttttcctctcttctcc 149145  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 10140755 - 10140707
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| |||||||||||||||| ||||| ||||    
T  10140755 tacaccgaaattcacagttgatgcttcatgtgtttttcttctcttctcc 10140707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 16836744 - 16836791
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  16836744 acaccgaaattcacagttgatgcttcatgtgcttttcctctcttctcc 16836791  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 26927155 - 26927202
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  26927155 acaccgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 26927202  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 41097416 - 41097463
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  41097416 acaccgaaattcacagttgatgcttcatgtgcttttcctctcttctcc 41097463  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 26199001 - 26198947
Alignment:
Q  75 attctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||| ||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  26199001 attctgtacaccgaaattcacagttgatgcttcctgtgcttttcctctcttctcc 26198947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 1067113 - 1067070
Alignment:
Q  86 cgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||    
T  1067113 cgaaattcacagttgatgcttcctgtgtttttcctctcttctcc 1067070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 3094725 - 3094678
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||  |||| |||||||||||||||| ||||    
T  3094725 acaccgaaattcacagttgatacttcctgtgtttttcctctcttctcc 3094678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 10135986 - 10135939
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||||||||| ||||| ||||    
T  10135986 acaccgaaattcacagttgatgcttcctgtgtttttcttctcttctcc 10135939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 41387433 - 41387480
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| || ||||||||||||| ||||| ||||    
T  41387433 acaccgaaattcacagttgatgcatcatgtgtttttcttctcttctcc 41387480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 14724571 - 14724534
Alignment:
Q  87 gaaattcacagttgaggcttcatgtgtttttcctctct 124  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  14724571 gaaattcacagttgatgcttcatgtgcttttcctctct 14724534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 39747002 - 39747074
Alignment:
Q  29 ttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttga 101  Q
    |||||||||||||||||||| ||||||| ||||| ||| | | || |||||| |||| ||| ||| |||||||    
T  39747002 ttttttgttacgaactcttcctataaaaggagagctcgcccccctcattcttcacactgaatttcgcagttga 39747074  T

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Target: scaffold0060 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 47430 - 47478
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  47430 tacaccgaaattcacagttgatgcttcctgtgcttttcctctcttctcc 47478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 52374 - 52422
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  52374 tacaccgaaattcacagttgatgcttcctgtgcttttcctctcttctcc 52422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 35161 - 35209
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  35161 tacaccgaaattcacagttgatgcttcctgtgcttttcctctcttctcc 35209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 7024 - 6977
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||| |||||| |||||||||| ||||||||||| ||||    
T  7024 acaccgaaattcatagttgatgcttcatgtgcttttcctctcttctcc 6977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 33684 - 33783
Alignment:
Q  30 tttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||| | | ||||||| ||||| ||  | |||| |||||| |||| |||||||||| |||| | |||||||| ||||| ||||| ||||    
T  33684 tttttgttacgaactatgcctataaaaggagagctcaccccactcattcttaacactgaaattcacatttgatgattcatgtgcttttcgtctcttctcc 33783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 193725 - 193772
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  193725 acaccgaaattcacagttgatgcttcctgtgcttttcctctcttctcc 193772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1910 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1910
Description:

Target: scaffold1910; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 500 - 455
Alignment:
Q  84 accgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    |||||||||||||||||| ||||| |||||||||| ||||| ||||    
T  500 accgaaattcacagttgatgcttcctgtgtttttcttctcttctcc 455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 3808 - 3852
Alignment:
Q  85 ccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  3808 ccgaaattcacagttgatgcttcctgtgcttttcctctcttctcc 3852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 9338 - 9386
Alignment:
Q  82 acaccgaaattcacagttgaggcttcatgtg-tttttcctctctgctcc 129  Q
    |||||||||||||||||||| ||||| |||| |||||||||||| ||||    
T  9338 acaccgaaattcacagttgatgcttcctgtgttttttcctctcttctcc 9386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 22308 - 22264
Alignment:
Q  85 ccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  22308 ccgaaattcacagttgatgcttcctgtggttttcctctcttctcc 22264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 64793 - 64749
Alignment:
Q  85 ccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||| | |||||||| ||||||||||| ||||    
T  64793 ccgaaattcacagttgatgattcatgtgcttttcctctcttctcc 64749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 697 - 745
Alignment:
Q  81 tacaccgaaattcacagttgaggcttcatgtgtttttcctctctgctcc 129  Q
    ||||||||||||||||||||| ||||| |||  ||||||||||| ||||    
T  697 tacaccgaaattcacagttgatgcttcctgtacttttcctctcttctcc 745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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