View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_149 (Length: 203)
Name: NF0778_low_149
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_149 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 26721830 - 26721656
Alignment:
| Q |
1 |
tcactttgggaacatgctcttcaacagagagtgataagcctcttacattccttgaatggatggcagcgacaacaccattcatccttcgtctatgaaatcc |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26721830 |
tcactttgggaacatgctcttcaaaagagagtgataagcctctaacattccttgaaaggatagcagcgacaacaccattcatccttcgtctatgaaatcc |
26721731 |
T |
|
| Q |
101 |
tctgttgtcgtgaatctaactgaaatcctcttctcttggttcattttttctacttcgtttcatcacaataatgct |
175 |
Q |
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||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
26721730 |
tctgtcgtcgtgaatctaactgaaatcctctccttttggttcattttttctacttcgtttcatcacaataatgct |
26721656 |
T |
|
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Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 2987298 - 2987123
Alignment:
| Q |
1 |
tcactttgggaacatgctcttcaacagagagtgataagcctcttacattccttgaatggatggcagcgacaacaccattcatccttcgtctatgaaatcc |
100 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
2987298 |
tcactttgggaacatgctcttaaaaagagagtgataagcctcttacattccttgaaaggatggcagcgacaacacctttcatccttcgtctacgaaatcc |
2987199 |
T |
|
| Q |
101 |
tctgttgtcgtgaatctaactgaaatcctcttctcttggttcatt-ttttctacttcgtttcatcacaataatgct |
175 |
Q |
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|
||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2987198 |
tctgtcgtcgtgaatctaactgaaatcctctcctcttggttcatttttttctacttcgtttcatcacaataatgct |
2987123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 9e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 45117079 - 45117254
Alignment:
| Q |
1 |
tcactttgggaacatgctcttcaacagagagtgataagcctcttacattccttgaatggatggcagcgacaacaccattcatccttcgtctatgaaatcc |
100 |
Q |
| |
|
||||||||||| ||||||||| || |||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
45117079 |
tcactttgggagcatgctcttaaaaagagagtgatgagcctcttacattccttgaaaggatggcagcgacaacacctttcatccttcgtctatgaaatcc |
45117178 |
T |
|
| Q |
101 |
tctgttgtcgtgaatctaactgaaatcctcttctcttggttca-ttttttctacttcgtttcatcacaataatgct |
175 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
45117179 |
tctgtcgtcgtgaatctaactgaaatcctctcctcttggttcatttttttctacctcgtttcatcacaataatgct |
45117254 |
T |
|
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