View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0778_low_155 (Length: 202)

Name: NF0778_low_155
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0778_low_155
NF0778_low_155
[»] chr8 (2 HSPs)
chr8 (1-69)||(31382481-31382549)
chr8 (5-69)||(5196834-5196898)
[»] chr1 (3 HSPs)
chr1 (5-69)||(18238944-18239008)
chr1 (5-69)||(25986108-25986172)
chr1 (5-69)||(34575652-34575716)
[»] chr6 (1 HSPs)
chr6 (5-69)||(10901161-10901225)
[»] chr4 (2 HSPs)
chr4 (5-69)||(35421498-35421562)
chr4 (5-69)||(53667991-53668055)
[»] chr3 (2 HSPs)
chr3 (1-61)||(42711288-42711348)
chr3 (5-70)||(12716450-12716515)
[»] chr2 (3 HSPs)
chr2 (5-61)||(31074758-31074814)
chr2 (5-69)||(35740289-35740353)
chr2 (5-56)||(9676710-9676761)
[»] chr7 (1 HSPs)
chr7 (8-69)||(5640756-5640817)


Alignment Details
Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31382481 - 31382549
Alignment:
Q  1 gctcttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattcttgg 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  31382481 gctcttgctccactagaagatttattattggtattaatcgaagtgaaagtctcattcctattttcttgg 31382549  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 5196898 - 5196834
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattcttgg 69  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| |||||||    
T  5196898 ttgctccactagaagattgattattgatattaatcgaagtggaagtctcattcatattttcttgg 5196834  T

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Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 18239008 - 18238944
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattcttgg 69  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  18239008 ttgctccactagaagattgattattggtattaatcgaagtggaagtctcattcctattttcttgg 18238944  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 25986108 - 25986172
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattcttgg 69  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||    
T  25986108 ttgctccactagaagattgattattgatattaatcgaagtggaagtctcattcctattttcttgg 25986172  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 34575716 - 34575652
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattcttgg 69  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||    
T  34575716 ttgctccactagaagattgattattggtgttaatcgaagtggaagtctcattcctattttcttgg 34575652  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 10901161 - 10901225
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattcttgg 69  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||    
T  10901161 ttgctccactagaagattgattattagtattaatcgaagtggaagtctcattcctattttcttgg 10901225  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 35421562 - 35421498
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattcttgg 69  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||    
T  35421562 ttgctccactagaagattgattattggtgttaatcgaagtggaagtctcattcctattttcttgg 35421498  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 53667991 - 53668055
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattcttgg 69  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||    
T  53667991 ttgctccactagaagattgattattgatattaatcgaagtggaagtctcattcctattttcttgg 53668055  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 42711348 - 42711288
Alignment:
Q  1 gctcttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctat 61  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  42711348 gctcttgctccactagaagattgattattggtaataatcgaagtggaagtctcattcctat 42711288  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 12716450 - 12716515
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattcttgga 70  Q
    |||||| | ||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||    
T  12716450 ttgctcaattagaagattgattattgatattaatcgaagtggaagtctcattcctattttcttgga 12716515  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 31074758 - 31074814
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctat 61  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31074758 ttgctccactagaagattgattattggtattaatcgaagtggaagtctcattcctat 31074814  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 35740353 - 35740289
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattcttgg 69  Q
    ||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||||||    
T  35740353 ttgctccacaagaagattgattattggtattaatcaaagtggaagtctcattcctattttcttgg 35740289  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 9676761 - 9676710
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcatt 56  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||||||    
T  9676761 ttgctccactagaagattgattattgatattaatccaagtggaagtctcatt 9676710  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 5640817 - 5640756
Alignment:
Q  8 ctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattcttgg 69  Q
    |||||||| ||||||  ||||||||||||||||||||||||||||||||||||| |||||||    
T  5640817 ctccactaaaagattggttattggtattaatcgaagtggaagtctcattcctattttcttgg 5640756  T

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