View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_19 (Length: 502)
Name: NF0778_low_19
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 67 - 489
Target Start/End: Original strand, 33961156 - 33961584
Alignment:
| Q |
67 |
ctttcaccttcacgagtgtggttactaaccctccaggttctgtaaaattcagccaacccattgttaaagcttcggtttttccttcaactcattctcctcc |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33961156 |
ctttcaccttcacgagtgtggttactaaccctccaggttctgtaaaattcagccaacccattgttaaagcttcggtttttccttcaactcattctcctcc |
33961255 |
T |
|
| Q |
167 |
taatgttcggttgaattttaaaggtaaatcaattctgggnnnnnnncaattttcagttttgattctgtattttgatgctgatgcattgaagattggtatt |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33961256 |
taatgttcggttgaattttaaaggtaaatcaattctgggtttttgtcaattttcagttttgattctgtattttgatgctgatgcattgaagattggtatt |
33961355 |
T |
|
| Q |
267 |
tcctgaaatgagctaaagtttttgaagaaatgagattgtagttgttgcatgcatcacttgcatgtttattatttcatgaaactgtaggcaattgaatgag |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33961356 |
tcctgaaatgagctaaagtttttgaagaaatgagattgtagttgttgcatgcatcacttgcatgtttattatttcatgaaactgtaggcaattgaatgag |
33961455 |
T |
|
| Q |
367 |
tgaaattggaatttt--------gcaatctaaagcttaagaatgttgatgatttgacactataaaagaggtgcaaagatgttaggagtataatccttaag |
458 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33961456 |
tgaaattggaattttggaatttcgcaatctaaagcttaagaatgttgatgatttgacacaataaaagaggtgcaaagatgttaggagtataatccttaag |
33961555 |
T |
|
| Q |
459 |
ggagactaaaactcacaagatttgcctattt |
489 |
Q |
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||||||||||||| |||||||||||||||| |
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| T |
33961556 |
ggagactaaaact--caagatttgcctattt |
33961584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 24499205 - 24499140
Alignment:
| Q |
67 |
ctttcaccttcacgagtgtggttactaaccctccaggttctgtaaaattcagccaacccattgtta |
132 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||| ||||| | ||||||| |||||||||||||| |
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|
| T |
24499205 |
ctttcaccttcacaagtgtggtttctaaccctcctggttcagataaattcatccaacccattgtta |
24499140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 17338657 - 17338721
Alignment:
| Q |
67 |
ctttcaccttcacgagtgtggttactaaccctccaggttctgtaaaattcagccaacccattgtt |
131 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||| ||||| | ||||||| ||||||||||||| |
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|
| T |
17338657 |
ctttcaccttcacaagtgtggtttctaaccctcctggttcaattaaattcatccaacccattgtt |
17338721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 6701968 - 6702032
Alignment:
| Q |
67 |
ctttcaccttcacgagtgtggttactaaccctccaggttctgtaaaattcagccaacccattgtt |
131 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||| ||||| | ||||||| ||||||||||||| |
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|
| T |
6701968 |
ctttcaccttcacaagtgtggtttctaaccctcctggttcaattaaattcatccaacccattgtt |
6702032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 54865729 - 54865794
Alignment:
| Q |
67 |
ctttcaccttcacgagtgtggttactaaccctccaggttctgtaaaattcagccaacccattgtta |
132 |
Q |
| |
|
||||||||||||| |||||||| |||||||||| ||||| | ||||||| |||||||||||||| |
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|
| T |
54865729 |
ctttcaccttcacaggtgtggtttctaaccctcctggttcaattaaattcatccaacccattgtta |
54865794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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