View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_2 (Length: 751)
Name: NF0778_low_2
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_2 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 523; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 29 - 673
Target Start/End: Original strand, 33441432 - 33442073
Alignment:
| Q |
29 |
ataaatgtgattgcagtctcatgtatccaacaaaatattgcaataattttccacataaacccttaattcacgacatcaagctactctctacttcacctct |
128 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33441432 |
ataaatgtgattgcagtctcatgtatccaacaaaatattgcaataattttccacataaacccttaattcacgacatcaagctactctctacttcagctct |
33441531 |
T |
|
| Q |
129 |
agctagctctagcaattcattgtatatggtttcaccatataaacaatttcagagtaggatgaactgacatattatccatcagcaaataatctcaatgcct |
228 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||| |
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| T |
33441532 |
agctagctctagcaattcattgtatatggtttcaccatataaacaatttcagagtaagttgaagtgacatattatccatcagcaaataatctcaatgcct |
33441631 |
T |
|
| Q |
229 |
ctcatggcttttattaatcataaataacaaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaata |
328 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33441632 |
ctcatgggttttattaatcataaataacaaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaata |
33441731 |
T |
|
| Q |
329 |
actagaaggtnnnnnnnnnntagcctctccttgaaacatcacacatgatcgattaacatccaatcttaaacagctatcaatctctgttaaatatttggaa |
428 |
Q |
| |
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|||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33441732 |
actaactgg---gaaaaaaacagcctctccttgaaacatcacacatgatcggttaacatccaatcttaaacagctatcaatctctgttaaatatttggaa |
33441828 |
T |
|
| Q |
429 |
caacttctttggcagcagggatcgacgggggacaccactagcaggccatggtgaactcgaaggtggtgcttcaggtgtcgccaggtcaagtgatggtgat |
528 |
Q |
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| ||||||||||||||||||||||||||| || | ||||||||||||||||| | ||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
33441829 |
aagcttctttggcagcagggatcgacggggaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtcaagtgatggtgat |
33441928 |
T |
|
| Q |
529 |
ggagaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgt |
628 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33441929 |
ggagaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgt |
33442028 |
T |
|
| Q |
629 |
accatcttctcccataggttgtaattataattttatcttgtccac |
673 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
33442029 |
accatcttctcccataggttgtaattataattttgtcttgcccac |
33442073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 168 - 673
Target Start/End: Original strand, 33451791 - 33452293
Alignment:
| Q |
168 |
taaacaatttcagagtaggatgaactgacatattatccatcagcaaataatctcaatgcctctcatggcttttattaatcataaataacaaaatgatatt |
267 |
Q |
| |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33451791 |
taaacaatttcagagtaagttgaactgacatattatccatcagcaaataatctcaatgcctctcatgggttttattaatcataaataacaaaatgatatt |
33451890 |
T |
|
| Q |
268 |
acattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactagaaggtnnnnnnnnnntagcctctccttgaaacat |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
33451891 |
acattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactaactgggaaaaaaac---agcctctccttgaaacat |
33451987 |
T |
|
| Q |
368 |
cacacatgatcgattaacatccaatcttaaacagctatcaatctctgttaaatatttggaacaacttctttggcagcagggatcgacgggggacaccact |
467 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || | ||| |
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| T |
33451988 |
cacacatgatcggttaacatccaatcttaaacagctatcaatctctgttaaatatttggaaaagcttctttggcagcagggatcgacggggaacgctact |
33452087 |
T |
|
| Q |
468 |
agcaggccatggtgaactcgaaggtggtgcttcaggtgtcgccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgtttt |
567 |
Q |
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|||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33452088 |
agcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgtttt |
33452187 |
T |
|
| Q |
568 |
ggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccataggttgtaattataattttatctt |
667 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33452188 |
ggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccataggttgtaattataattttgtctt |
33452287 |
T |
|
| Q |
668 |
gtccac |
673 |
Q |
| |
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| |||| |
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| T |
33452288 |
gcccac |
33452293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 545 - 673
Target Start/End: Original strand, 33399629 - 33399757
Alignment:
| Q |
545 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata |
644 |
Q |
| |
|
||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| |
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| T |
33399629 |
ctggataccaaccatcttgttttggtaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccata |
33399728 |
T |
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| Q |
645 |
ggttgtaattataattttatcttgtccac |
673 |
Q |
| |
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| T |
33399729 |
ggttgtcaatgcaattttatcatgtccac |
33399757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 532 - 673
Target Start/End: Original strand, 33395729 - 33395870
Alignment:
| Q |
532 |
gaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtacc |
631 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| ||||||||| |||||||||||||||| ||| | |||||||| | | ||| ||||||||||| |
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| T |
33395729 |
gaaggtgagggtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatgtacc |
33395828 |
T |
|
| Q |
632 |
atcttctcccataggttgtaattataattttatcttgtccac |
673 |
Q |
| |
|
||||||| ||||||||||| | || |||| |||| ||||||| |
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| T |
33395829 |
atcttcttccataggttgtcaataaaattgtatcatgtccac |
33395870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 33451649 - 33451712
Alignment:
| Q |
29 |
ataaatgtgattgcagtctcatgtatccaacaaaatattgcaataattttccacataaaccctta |
93 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |
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| T |
33451649 |
ataaatgtgattgcagtctcatgtatccaacaaaatgttgttataa-tttccacataaaccctta |
33451712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 137; Significance: 4e-71; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 29 - 242
Target Start/End: Complemental strand, 1613 - 1400
Alignment:
| Q |
29 |
ataaatgtgattgcagtctcatgtatccaacaaaatattgcaataattttccacataaacccttaattc--acgacatcaagctactctctacttcacct |
126 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | || ||||||||||||| |||||||||||| |
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|
| T |
1613 |
ataaatgtgattgcagcgtcatgtatccaacaaaatattgcaataattttccacataaacccctagacctaacaacatcaagctactgtctacttcacct |
1514 |
T |
|
| Q |
127 |
ctagctagctctagcaattcattgtatatggtttcaccatataaacaatttcagagtaggatgaactgacatattatccatcagcaaataatctcaatgc |
226 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||||||||| ||| ||||| ||||||| |||||||||||||||| |||||||||||||||||||| |
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|
| T |
1513 |
ctagctagctctaacacttcattgtatatggtttcaccatataagcaa-ttcag-gtaggataaactgacatattatccctcagcaaataatctcaatgc |
1416 |
T |
|
| Q |
227 |
ctctcatggcttttat |
242 |
Q |
| |
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|||||||||||||||| |
|
|
| T |
1415 |
ctctcatggcttttat |
1400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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