View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_20 (Length: 497)
Name: NF0778_low_20
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 11 - 423
Target Start/End: Complemental strand, 52860738 - 52860326
Alignment:
| Q |
11 |
cagagagaaagttacgagcaaggttgagaatttgaaggttggtgagggtgagaagtgaagaagggagataaccagagagagagttgttgtgaagataaac |
110 |
Q |
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| T |
52860738 |
cagagagaaagttacgagcaaggttgagaatttgaagattggtgagggtgagaagtgaaggagggagataaccagagagagagttgttgtgaagataaac |
52860639 |
T |
|
| Q |
111 |
agcacgtaggaagagacaatgagaaagagaagaaggtattgatgagttaaggttgttggaatggagactaagtttacgaagctgtgagagattagagagt |
210 |
Q |
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| T |
52860638 |
agcacgtaggaagagacaatgagaaagagaagaaggtattgatgagttaaggttgttggaatggagactaagtttacgaagctgtgagagattagagagt |
52860539 |
T |
|
| Q |
211 |
gatgaagatattgaaccagtgagttgaagacgaggtaaacgtatagtgtgaactctgttattgttgttgtaacagagaatgccatgccaatcacatggtg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52860538 |
gatgaagatattgaaccagtgagttgaagacgaggtaaacgtatagtgtgaactctgttattgttgttgtaacagagaatgccatgccaatcacatggtg |
52860439 |
T |
|
| Q |
311 |
ctgaaggtgttgatggatcccaagttgttaaggcattgagtgggtcaagaaggtttagtttgaagattgttaaggcttggatttcggaatgagatgagtt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52860438 |
ctgaaggtgttgatggatcccaagttgttaaggcattgagtgggtcaagaaggtttagtttgaagattgttaaggcttggatttcggaatgagatgagtt |
52860339 |
T |
|
| Q |
411 |
gatctgtgctgct |
423 |
Q |
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| T |
52860338 |
gatttgtgttgct |
52860326 |
T |
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