View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_22 (Length: 474)
Name: NF0778_low_22
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_22 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 96 - 459
Target Start/End: Original strand, 31052685 - 31053047
Alignment:
| Q |
96 |
cttcttctattcatcactttagtattactatattgagactctcgcacattgttcgtcatagaatgatcctatcaaacttaattagttgcagggaaaatgg |
195 |
Q |
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| T |
31052685 |
cttcttctcttcatcactttagaattactatattgagactctcgcacattgttcgtcatagaatgatcctatcaaacttaattagttgcagggaaaatgg |
31052784 |
T |
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| Q |
196 |
aattccttttaaagtaggtatgtacctcctttaaaccaagtttgttaaaatttagttagatttcgcatacattggatcttttgcttctgtnnnnnnnnnn |
295 |
Q |
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| T |
31052785 |
aattccttttaaagtaggtatgtacctcctttaaaccaagtttgttaaaatttagttagatttcgcatacattggatcttttgcttctgt-aaaataaat |
31052883 |
T |
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| Q |
296 |
nnnnnntttaaatggcagatgttggttgaagcagaacgaatcggatagctatgtgatagcttacgattgcagttagtttgttagcaattagaatgtatgc |
395 |
Q |
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| T |
31052884 |
aaaaaatttaaatggcagatgttggttgaagcagaacgaatcggatagctatgtgatagcttacgattgcagttagtttgttagcaattagagtgtatgc |
31052983 |
T |
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| Q |
396 |
tagtttctctgcaaccctttcagttctattatatggatccagtttcatccttctctgccaccat |
459 |
Q |
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| T |
31052984 |
tagtttctctgcaaccctttcagttctattatatggatccagtttcatccttctctgccaccat |
31053047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 320 - 459
Target Start/End: Complemental strand, 170341 - 170202
Alignment:
| Q |
320 |
gttgaagcagaacgaatcggatagctatgtgatagcttacgattgcagttagtttgttagcaattagaatgtatgctagtttctctgcaaccctttcagt |
419 |
Q |
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| T |
170341 |
gttgaagcagaatgaatcggatagctatgtgataacttgcgattgcagttagtttgttagcaattagagtgtatgctagtttctctgcaaccctttcagt |
170242 |
T |
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| Q |
420 |
tctattatatggatccagtttcatccttctctgccaccat |
459 |
Q |
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| T |
170241 |
tctattatatggatccagtttcatccttctctgccaccat |
170202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 5422786 - 5422726
Alignment:
| Q |
320 |
gttgaagcagaacgaatcggatagctatgtgatagcttacgattgcagttagtttgttagc |
380 |
Q |
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| T |
5422786 |
gttgaagcagaaggaatctgatagctatctgatagcttaaaattgcagttagtttgttagc |
5422726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 5345534 - 5345470
Alignment:
| Q |
320 |
gttgaagcagaacgaatcggatagctatgtgatagcttacgattgcagttagtttgttagcaatt |
384 |
Q |
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| T |
5345534 |
gttgaagaagaacgaatatgatagctataagatagcttactattgcagttagttcgttagcaatt |
5345470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 384
Target Start/End: Original strand, 5363977 - 5364041
Alignment:
| Q |
320 |
gttgaagcagaacgaatcggatagctatgtgatagcttacgattgcagttagtttgttagcaatt |
384 |
Q |
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| T |
5363977 |
gttgaagaagaacgaatctgatagctatgtgatagcttaatgttgcagttagttctttagcaatt |
5364041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 5364062 - 5364108
Alignment:
| Q |
382 |
attagaatgtatgctagtttctctgcaaccctttcagttctattata |
428 |
Q |
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| T |
5364062 |
attagaatgtatgaaagtttctctgctaccatttcagttctattata |
5364108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 20334756 - 20334797
Alignment:
| Q |
339 |
gatagctatgtgatagcttacgattgcagttagtttgttagc |
380 |
Q |
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| T |
20334756 |
gatagctatctgatagcttaaaattgcagttagtttgttagc |
20334797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 20334726 - 20334762
Alignment:
| Q |
320 |
gttgaagcagaacgaatcggatagctatgtgatagct |
356 |
Q |
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| T |
20334726 |
gttgaagcagaacgaatctgatagctatctgatagct |
20334762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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