View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_23 (Length: 467)
Name: NF0778_low_23
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 113 - 333
Target Start/End: Complemental strand, 20171198 - 20170978
Alignment:
| Q |
113 |
tctataaaattgcatcgatgtatagagcacatttttcccagttcaagttaaacttccacttcaactttcatcaaactcgaggtgtaatggtttatatagg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20171198 |
tctataaaattgcatcgatgtatagagcacatttttcccagttcaagttaaacttccacttcaactttcatcaaactcgaggtgtaatggtttatatagg |
20171099 |
T |
|
| Q |
213 |
ctgagaactccttgttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccaccgaatcatttgcatgtgttctgtttctccaagat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20171098 |
ctgagaactccttgttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccaccgaatcatttgcatgtgctctgtttctccaagat |
20170999 |
T |
|
| Q |
313 |
gggtttctctccttgtctctc |
333 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
20170998 |
gggtttctctccttgtctctc |
20170978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 113 - 333
Target Start/End: Complemental strand, 44392908 - 44392688
Alignment:
| Q |
113 |
tctataaaattgcatcgatgtatagagcacatttttcccagttcaagttaaacttccacttcaactttcatcaaactcgaggtgtaatggtttatatagg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392908 |
tctataaaattgcatcgatgtatagagcacatttttcccagttcaagttaaacttccacttcaactttcatcaaactcgaggtgtaatggtttatatagg |
44392809 |
T |
|
| Q |
213 |
ctgagaactccttgttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccaccgaatcatttgcatgtgttctgtttctccaagat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44392808 |
ctgagaactccttgttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccaccgaatcatttgcatgtgctctgtttctccaagat |
44392709 |
T |
|
| Q |
313 |
gggtttctctccttgtctctc |
333 |
Q |
| |
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||||||||||||||||||||| |
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| T |
44392708 |
gggtttctctccttgtctctc |
44392688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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