View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_24 (Length: 466)
Name: NF0778_low_24
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 49956497 - 49956071
Alignment:
| Q |
11 |
cagagaataaaatgatgaatgtgttaaaataagaaaatccaaacaaattacatatatatgaaaaggactatgtatatgtaatctaagagatatagcaagt |
110 |
Q |
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| T |
49956497 |
cagagaataaaatgatgaatgtgttaaaataagaaaatccaaacaaattacatatatatgaaaaggactatgtatatgtaatctaagagatatagcaagt |
49956398 |
T |
|
| Q |
111 |
tttgaaagaataaaacaacaaatgtggggttaagtgtatccggccccaagttagattgcaaaaaccctaatgatagatactgatagcaacctttccatga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49956397 |
tttgaaagaataaaacaacaaatgtggggttaagtgtatccggccccaagttagattgcaaaaaccctaatgatagatactgatagcaacctttccatga |
49956298 |
T |
|
| Q |
211 |
agcaagtctaagtcccctgggtagaattttacacccagaaaggaggcattgagctattgtggaccatacatgacctgtttctcaaacatgtcccccctct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49956297 |
agcaagtctaagtcccctgggtagaattttacacccagaaaggaggcattgagctattgtggaccatacatgacctgtttctcaaacatgtcccccctct |
49956198 |
T |
|
| Q |
311 |
gttagcacaataaccacgctaaatgtctctacgtaccccatgtcttgtcttcctttctttcttagtataaatgctactatctttcattcttagggcaacc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49956197 |
gttagcacaataaccacgctaaatgtctctacgtaccctatgtcttgtcttcctttctttcttagtataaatgctactatctttcattcttagggcaacc |
49956098 |
T |
|
| Q |
411 |
cacctttaatgccccaaacatacatgt |
437 |
Q |
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||||||||||||||||||||||||||| |
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| T |
49956097 |
cacctttaatgccccaaacatacatgt |
49956071 |
T |
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