View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_25 (Length: 443)
Name: NF0778_low_25
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 53 - 362
Target Start/End: Original strand, 6358705 - 6359020
Alignment:
| Q |
53 |
ttttttatctcgtctaagtagaagttaccatttgcaataataagttcacttatagagcaagaaatgtcattcaaagattatttatgcatactcagcaaaa |
152 |
Q |
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| T |
6358705 |
ttttttatctcgtctaagtagaagttaccatttgcaataataagttcacttatagagcaagaaatgtcattcaaagattatttatgcatactcagcaaaa |
6358804 |
T |
|
| Q |
153 |
cttggattcgagacctttgnnnnnnnnnnnnn------cttgatctgtctaaactgaagatggaaaatcattccaatgccaagaatgtgggttagttagg |
246 |
Q |
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| T |
6358805 |
cttggattcgagaccttttttttttttttttttttcttcttgatctgtctaaactgaagatggaaaatcattccaatgccaagaatgtgggttagttagg |
6358904 |
T |
|
| Q |
247 |
tacaaggaacagataaagcaaatttcaaccggaataaaatcactttcaaaagaagcttctaatccttcttctagtaacaatatcatttaacatttctgac |
346 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6358905 |
tacaaggaatagataaagcaaatttcaaccggaataaaatcactttcaaaagaagcttctaatccttcttctagtaacaatatcatttaacatttctgac |
6359004 |
T |
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| Q |
347 |
tataacttgtacctgc |
362 |
Q |
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| T |
6359005 |
tataacttgtacctgc |
6359020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 434
Target Start/End: Original strand, 6359029 - 6359060
Alignment:
| Q |
403 |
ctttttatgtcttaccctttctgtatattctt |
434 |
Q |
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| T |
6359029 |
ctttttatgtcttaccctttctgtatattctt |
6359060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 203 - 356
Target Start/End: Complemental strand, 32857631 - 32857478
Alignment:
| Q |
203 |
aagatggaaaatcattccaatgccaagaatgtgggttagttaggtacaaggaacagataaagcaaatttcaaccggaataaaatcactttcaaaagaagc |
302 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||| | |||||||| || | | ||||||| |
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| T |
32857631 |
aagatggaaaagcatttcaatgccaagaatgtgggttagttagagacaaggaagagataaagcaaattgcaactgaaataaaatttctattagaagaagc |
32857532 |
T |
|
| Q |
303 |
ttctaatccttcttctagtaacaatatcatttaacatttctgactataacttgt |
356 |
Q |
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|||||| |||||||| | | || |||| ||||||||||||||||| ||||||| |
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| T |
32857531 |
ttctaagccttcttccaatggcagtatcctttaacatttctgactagaacttgt |
32857478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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