View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0778_low_31 (Length: 421)

Name: NF0778_low_31
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0778_low_31
NF0778_low_31
[»] chr7 (6 HSPs)
chr7 (115-269)||(7961744-7961898)
chr7 (140-247)||(11269946-11270053)
chr7 (139-243)||(1716661-1716765)
chr7 (177-240)||(1103154-1103217)
chr7 (139-184)||(36207996-36208041)
chr7 (174-244)||(1345100-1345169)
[»] chr1 (5 HSPs)
chr1 (115-269)||(22827035-22827189)
chr1 (117-270)||(22840935-22841088)
chr1 (115-221)||(22826640-22826746)
chr1 (146-243)||(24272740-24272837)
chr1 (151-240)||(24284819-24284908)
[»] chr6 (15 HSPs)
chr6 (115-270)||(13557983-13558138)
chr6 (115-269)||(2921850-2922004)
chr6 (116-265)||(2923167-2923317)
chr6 (115-267)||(27340613-27340763)
chr6 (115-267)||(27401353-27401503)
chr6 (115-222)||(13556012-13556119)
chr6 (115-269)||(16403491-16403645)
chr6 (157-262)||(11678815-11678919)
chr6 (122-228)||(11677130-11677236)
chr6 (140-224)||(22880002-22880086)
chr6 (139-242)||(16910128-16910231)
chr6 (140-224)||(22898117-22898201)
chr6 (218-262)||(11676990-11677033)
chr6 (151-201)||(11681497-11681548)
chr6 (140-247)||(14721698-14721804)
[»] chr5 (3 HSPs)
chr5 (117-262)||(19670645-19670789)
chr5 (140-262)||(32795563-32795684)
chr5 (159-262)||(32796346-32796448)
[»] chr4 (9 HSPs)
chr4 (115-235)||(27272572-27272693)
chr4 (146-239)||(53469692-53469785)
chr4 (139-251)||(10395948-10396060)
chr4 (117-240)||(53472552-53472673)
chr4 (151-240)||(29235165-29235255)
chr4 (115-230)||(21206356-21206473)
chr4 (139-232)||(32015167-32015260)
chr4 (122-247)||(50887414-50887538)
chr4 (145-244)||(13816935-13817034)
[»] chr8 (4 HSPs)
chr8 (105-199)||(42001905-42001999)
chr8 (286-350)||(41997249-41997313)
chr8 (191-239)||(42000557-42000605)
chr8 (139-232)||(33897214-33897307)
[»] chr2 (5 HSPs)
chr2 (117-247)||(8761182-8761313)
chr2 (145-247)||(37965518-37965621)
chr2 (153-240)||(10128497-10128584)
chr2 (185-246)||(15140798-15140859)
chr2 (146-202)||(25550113-25550168)
[»] chr3 (4 HSPs)
chr3 (139-247)||(25889613-25889721)
chr3 (211-269)||(25579000-25579058)
chr3 (116-247)||(30046407-30046539)
chr3 (157-254)||(31141386-31141483)
[»] scaffold0065 (1 HSPs)
scaffold0065 (122-262)||(34670-34807)
[»] scaffold0007 (1 HSPs)
scaffold0007 (155-228)||(260213-260286)


Alignment Details
Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 115 - 269
Target Start/End: Complemental strand, 7961898 - 7961744
Alignment:
Q  115 tttgaacagtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttg 214  Q
    |||||| |||||||||||||||  ||||| |||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||| | ||||    
T  7961898 tttgaatagtagaagtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaaacctttg 7961799  T
Q  215 catatttcttcatattatccgatgtgagacattattctaattattattattgata 269  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  7961798 catatttcttcatattatgcgatgtgggacataattctaattattattattgata 7961744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 11270053 - 11269946
Alignment:
Q  140 tataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatgt 239  Q
    |||| ||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  11270053 tatagcaaaacccactaactattggtgcaactaatactaacacacaaggcttttatttatatgaccaaacttttttatatttcttcatattatccgatgt 11269954  T
Q  240 gagacatt 247  Q
    | ||||||    
T  11269953 gggacatt 11269946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 1716661 - 1716765
Alignment:
Q  139 ctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatg 238  Q
    |||||| ||||| |||||||||||| |||||| | || ||||||||||||| |||||||||||| |||||  ||| ||||||| |||||||| | |||||    
T  1716661 ctataaaaaaactcactaactattgatgcaagaaatattaacacacaagacctttatttatatggtcaagtctttacatattttttcatattcttcgatg 1716760  T
Q  239 tgaga 243  Q
    |||||    
T  1716761 tgaga 1716765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 1103217 - 1103154
Alignment:
Q  177 taacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatgtg 240  Q
    ||||||||||| ||||||||||||||  ||||  ||| ||||||||||||||||||||||||||    
T  1103217 taacacacaaggcttttatttatatggccaagtctttacatatttcttcatattatccgatgtg 1103154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 36208041 - 36207996
Alignment:
Q  139 ctataacaaaacccactaactattggtgcaagtattactaacacac 184  Q
    ||||| |||||||||||||||||||||||||| | |||||||||||    
T  36208041 ctatagcaaaacccactaactattggtgcaagaaatactaacacac 36207996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 1345169 - 1345100
Alignment:
Q  174 tactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatgtgagac 244  Q
    |||||||||||||||  ||||||||||||||||||   || ||||||||||| |||| | |||||||||||    
T  1345169 tactaacacacaagatctttatttatatgatcaag-tcttacatatttcttcttattcttcgatgtgagac 1345100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 115 - 269
Target Start/End: Original strand, 22827035 - 22827189
Alignment:
Q  115 tttgaacagtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttg 214  Q
    |||||| |||||||||||||||  |||||||||||||||||||||||||||||||| | ||  |||||||||| ||||||||||||||| ||| | ||||    
T  22827035 tttgaatagtagaagtaatgctagctataacaaaacccactaactattggtgcaagaaatatgaacacacaaggcttttatttatatgaccaaacctttg 22827134  T
Q  215 catatttcttcatattatccgatgtgagacattattctaattattattattgata 269  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  22827135 catatttcttcatattatccgatgtgggacataattctaattattattattgata 22827189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 117 - 270
Target Start/End: Complemental strand, 22841088 - 22840935
Alignment:
Q  117 tgaacagtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgca 216  Q
    |||| |||||||||||||||  |||||  ||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||||| ||||| ||||||    
T  22841088 tgaatagtagaagtaatgctagctatagtaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttttatgaccaagcctttgca 22840989  T
Q  217 tatttcttcatattatccgatgtgagacattattctaattattattattgatag 270  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  22840988 tatttcttcatattatccgatgtgggacataattctaattattattattgatag 22840935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 22826640 - 22826746
Alignment:
Q  115 tttgaacagtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttg 214  Q
    |||||| |||||||||||||||  ||||| ||||| |||||||||||||||||||| | |||||||||| ||| ||||||||||||||| ||||| ||||    
T  22826640 tttgaatagtagaagtaatgctagctatagcaaaatccactaactattggtgcaagaaatactaacacataaggcttttatttatatgaccaagcctttg 22826739  T
Q  215 catattt 221  Q
    || ||||    
T  22826740 cagattt 22826746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 146 - 243
Target Start/End: Complemental strand, 24272837 - 24272740
Alignment:
Q  146 aaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatgtgaga 243  Q
    ||||| ||||||||||||||||||| | |||||||||||||| | ||||| |||||  |||||  |||||||||||||||||| | | ||||||||||    
T  24272837 aaaactcactaactattggtgcaagaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttcatactctacgatgtgaga 24272740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 24284908 - 24284819
Alignment:
Q  151 ccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatgtg 240  Q
    ||||| |||||||||||||| | || ||||||||||  | |||||||||||   |||  |||||||||||| |||||||| || ||||||    
T  24284908 ccactgactattggtgcaagaaatattaacacacaatgcctttatttatatagccaaatatttgcatatttgttcatattctctgatgtg 24284819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 115 - 270
Target Start/End: Original strand, 13557983 - 13558138
Alignment:
Q  115 tttgaacagtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttg 214  Q
    |||||| |||||||||||||||  | ||| ||||| |||||||||||||||||| | | |||||||||||||  ||||||||||||||| ||||| ||||    
T  13557983 tttgaatagtagaagtaatgctagcaatagcaaaatccactaactattggtgcatgaaatactaacacacaatgcttttatttatatgaccaagcctttg 13558082  T
Q  215 catatttcttcatattatccgatgtgagacattattctaattattattattgatag 270  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  13558083 catatttcttcatattatccgatgtgggacataattctaattattattattgatag 13558138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 115 - 269
Target Start/End: Original strand, 2921850 - 2922004
Alignment:
Q  115 tttgaacagtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttg 214  Q
    |||||| | |||| ||||||||  ||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| | ||||   |||    
T  2921850 tttgaatattagacgtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacataagacttttatttatattaccaagtcattg 2921949  T
Q  215 catatttcttcatattatccgatgtgagacattattctaattattattattgata 269  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||| ||||||    
T  2921950 catatttcttcatattatccgatgtgagacataaatctaattattattgttgata 2922004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 116 - 265
Target Start/End: Original strand, 2923167 - 2923317
Alignment:
Q  116 ttgaacagtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaag-catttg 214  Q
    ||||| ||||||||||||  |  ||||||||| |||||||||||||| ||||||| | |||||||||||||||||||||||||||||| |||| | ||||    
T  2923167 ttgaatagtagaagtaatattagctataacaagacccactaactattagtgcaagaagtactaacacacaagacttttatttatatgaccaagccttttg 2923266  T
Q  215 catatttcttcatattatccgatgtgagacattattctaattattattatt 265  Q
    |||||||||||||||||||||||||| || || ||||||||||||||||||    
T  2923267 catatttcttcatattatccgatgtgggaaataattctaattattattatt 2923317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 115 - 267
Target Start/End: Original strand, 27340613 - 27340763
Alignment:
Q  115 tttgaacagtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttg 214  Q
    |||||| |||||||||||||||   |||| ||||||||||||||||||||| ||||   ||||||||||||    |||||||||||||| ||||| ||||    
T  27340613 tttgaatagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt--ttttatttatatgaccaagcctttg 27340710  T
Q  215 catatttcttcatattatccgatgtgagacattattctaattattattattga 267  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27340711 catatttcttcatattatccgatgtgggacattattctaattattattattga 27340763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 115 - 267
Target Start/End: Original strand, 27401353 - 27401503
Alignment:
Q  115 tttgaacagtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttg 214  Q
    |||||| |||||||||||||||   |||| ||||||||||||||||||||| ||||   ||||||||||||    |||||||||||||| ||||| ||||    
T  27401353 tttgaatagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt--ttttatttatatgaccaagcctttg 27401450  T
Q  215 catatttcttcatattatccgatgtgagacattattctaattattattattga 267  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27401451 catatttcttcatattatccgatgtgggacattattctaattattattattga 27401503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 13556012 - 13556119
Alignment:
Q  115 tttgaacagtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttg 214  Q
    |||||| |||||||||||||||  ||||| ||||||||| |||||||||||||||| | |||||||||||||| ||||||||||||||| ||||| ||||    
T  13556012 tttgaatagtagaagtaatgctagctatagcaaaacccagtaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaagcctttg 13556111  T
Q  215 catatttc 222  Q
    ||||||||    
T  13556112 catatttc 13556119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 115 - 269
Target Start/End: Complemental strand, 16403645 - 16403491
Alignment:
Q  115 tttgaacagtagaagtaatgctgc-ctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcattt 213  Q
    |||||| |||||||||||||||   ||||| ||||| ||||||| ||||||||||| || ||  ||||||||||||||||||||||||||  |||   ||    
T  16403645 tttgaatagtagaagtaatgctcagctatagcaaaatccactaattattggtgcaaataatataaacacacaagacttttatttatatgactaag-tctt 16403547  T
Q  214 gcatatttcttcatattatccgatgtgagacattattctaattattattattgata 269  Q
    |||||||||||||||||| | |||||| | |||||||||||| |||||||||||||    
T  16403546 gcatatttcttcatattacctgatgtggggcattattctaataattattattgata 16403491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 157 - 262
Target Start/End: Complemental strand, 11678919 - 11678815
Alignment:
Q  157 actattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatgtgagacattattctaatt 256  Q
    ||||||||||  || | ||||||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||| |||||| |||| |||    
T  11678919 actattggtgttagaaatactaacacacaagagttttatttacatgaccaagcctttgcatatttcttcatattatccgatgtgggacatt-ttctcatt 11678821  T
Q  257 attatt 262  Q
    ||||||    
T  11678820 attatt 11678815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 11677236 - 11677130
Alignment:
Q  122 agtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatattt 221  Q
    |||||| ||||||||  |||||  ||||||| |||||||||||||  || | ||||||||||||||| |||||||||||||||||| | |||||||||||    
T  11677236 agtagaggtaatgctagctataggaaaacccgctaactattggtgttagaaatactaacacacaagagttttatttatatgatcaatcctttgcatattt 11677137  T
Q  222 cttcata 228  Q
    |||||||    
T  11677136 cttcata 11677130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 22880002 - 22880086
Alignment:
Q  140 tataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttctt 224  Q
    |||| ||||||||||||| |||||||||||| | || |||||||||| || ||||||||||||| |||| ||||  |||||||||    
T  22880002 tatagcaaaacccactaattattggtgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctt 22880086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 16910128 - 16910231
Alignment:
Q  139 ctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatg 238  Q
    ||||| |||||| ||| ||||||||| ||||  | ||||||||||||| |||||||||||||    ||||  |||||||||| ||||||||||||||| |    
T  16910128 ctatagcaaaacacacaaactattggcgcaacaaatactaacacacaatacttttatttataatgccaagtctttgcatattccttcatattatccgacg 16910227  T
Q  239 tgag 242  Q
    ||||    
T  16910228 tgag 16910231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 22898117 - 22898201
Alignment:
Q  140 tataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttctt 224  Q
    |||| ||||||||||||| |||||||||||| | || ||||||| || || ||||||||||||| |||| ||||  |||||||||    
T  22898117 tatagcaaaacccactaattattggtgcaagaaatattaacacaaaaaacctttatttatatgaccaagtatttatatatttctt 22898201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 11677033 - 11676990
Alignment:
Q  218 atttcttcatattatccgatgtgagacattattctaattattatt 262  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||    
T  11677033 atttcttcatattatccgatgtgagacatt-ttcaaattattatt 11676990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 11681497 - 11681548
Alignment:
Q  151 ccactaactattggtgcaagta-ttactaacacacaagacttttatttatat 201  Q
    ||||||||||||| |||||| | |||||||||||||| ||||||||||||||    
T  11681497 ccactaactattgttgcaagaaattactaacacacaaaacttttatttatat 11681548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 14721804 - 14721698
Alignment:
Q  140 tataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatgt 239  Q
    |||||||||||||| ||||||||| |||||| | |||| | | ||||| |||||||||||| |  |||   ||||||||||||||  |||| ||||||||    
T  14721804 tataacaaaacccattaactattgctgcaagaaatacttataaacaaggcttttatttata-ggccaaatctttgcatatttctttctattctccgatgt 14721706  T
Q  240 gagacatt 247  Q
    | ||||||    
T  14721705 gggacatt 14721698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 117 - 262
Target Start/End: Complemental strand, 19670789 - 19670645
Alignment:
Q  117 tgaacagtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgca 216  Q
    |||| |||||| |||| |||  ||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||  |||| ||||||    
T  19670789 tgaatagtagaggtaacgctagctatagcaaaacccactaactattggtacaagtaatactaacacacaaggcttttatttatatgactaagcctttgca 19670690  T
Q  217 tatttcttcatattatccgatgtgagacattattctaattattatt 262  Q
    |||||||||||||||||  |||||||||||| |||| |||||||||    
T  19670689 tatttcttcatattatcttatgtgagacatt-ttctcattattatt 19670645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 140 - 262
Target Start/End: Original strand, 32795563 - 32795684
Alignment:
Q  140 tataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatgt 239  Q
    |||| ||||||||||||||||||||| |||||| |||| |||| ||||||||||||| ||||||  |||  |||||||||||||||||||||||||||||    
T  32795563 tatagcaaaacccactaactattggtacaagtaatactgacacgcaagacttttattaatatgactaagtctttgcatatttcttcatattatccgatgt 32795662  T
Q  240 gagacattattctaattattatt 262  Q
    | |||||| |||| |||||||||    
T  32795663 gggacatt-ttctcattattatt 32795684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 159 - 262
Target Start/End: Original strand, 32796346 - 32796448
Alignment:
Q  159 tattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatgtgagacattattctaattat 258  Q
    |||| ||||||| | |||||||||||||| |||||||||||||||  |||| ||||||||||||||||||||||||||| || |||||| |||| |||||    
T  32796346 tatttgtgcaaggaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattatccgatctgggacatt-ttctcattat 32796444  T
Q  259 tatt 262  Q
    ||||    
T  32796445 tatt 32796448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 27272693 - 27272572
Alignment:
Q  115 tttgaacagtagaagtaatgctgcctataacaaaa-cccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcattt 213  Q
    |||||| |||||||||||||||  ||||| ||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||| | |||    
T  27272693 tttgaatagtagaagtaatgctagctatagcaaaaacccactaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaaaccttt 27272594  T
Q  214 gcatatttcttcatattatccg 235  Q
    ||||||||||||||||||||||    
T  27272593 gcatatttcttcatattatccg 27272572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 53469692 - 53469785
Alignment:
Q  146 aaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatgt 239  Q
    |||| ||||||||||||| | |||| | |||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| |||||    
T  53469692 aaaatccactaactattgattcaagaaatactaacacacaagacttttatttatatgaccaagtctttgcatatttcttcatattatctgatgt 53469785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 10396060 - 10395948
Alignment:
Q  139 ctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatg 238  Q
    ||||| || |||||||||||||||| |||||| | |||||||||||||| ||||||||||||||  | ||  ||||||||||||||||| || || ||||    
T  10396060 ctatagcataacccactaactattgatgcaagaaatactaacacacaaggcttttatttatatggccgagtctttgcatatttcttcatcttctctgatg 10395961  T
Q  239 tgagacattattc 251  Q
    |||||||| ||||    
T  10395960 tgagacataattc 10395948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 53472552 - 53472673
Alignment:
Q  117 tgaacagtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgca 216  Q
    |||| |||||| |||| |||  ||||| |||||||||||||| ||||||||| | | ||||||||||||| |||||||||||||||  ||||  ||||||    
T  53472552 tgaatagtagaggtaacgctagctatagcaaaacccactaaccattggtgcatgaaatactaacacacaa-acttttatttatatg-gcaagtctttgca 53472649  T
Q  217 tatttcttcatattatccgatgtg 240  Q
    ||||||||| ||||||||||||||    
T  53472650 tatttcttcgtattatccgatgtg 53472673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 29235165 - 29235255
Alignment:
Q  151 ccactaactattggtgcaagta-ttactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatgtg 240  Q
    |||| ||||||||||||||| | ||||||||||||||| | ||||||||||||  ||||  ||||||||||| ||||||| ||||||||||    
T  29235165 ccacgaactattggtgcaagaaattactaacacacaaggcctttatttatatggccaagtctttgcatattttttcatataatccgatgtg 29235255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 21206473 - 21206356
Alignment:
Q  115 tttgaacagtagaagtaatgctgcctataacaaaa-cccactaactattggtgcaagtat-tactaacacacaagacttttatttatatgatcaagcatt 212  Q
    |||||| | |||||||||||||  ||||||||||| ||||||||||||||||| ||  |  |||||| ||||| | ||||||||||||||| ||||| ||    
T  21206473 tttgaataatagaagtaatgctaactataacaaaaacccactaactattggtgtaataaaatactaatacacatggcttttatttatatgaccaagcctt 21206374  T
Q  213 tgcatatttcttcatatt 230  Q
    || |||||||||| ||||    
T  21206373 tgtatatttcttcgtatt 21206356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 32015260 - 32015167
Alignment:
Q  139 ctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattat 232  Q
    ||||| |||||||||||||||||||||||||| | ||||||||||||| || ||||||||| |   ||||  ||||||||| ||||| ||||||    
T  32015260 ctatagcaaaacccactaactattggtgcaagaaatactaacacacaaaacctttatttatgttgccaagtctttgcatatatcttcctattat 32015167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 247
Target Start/End: Original strand, 50887414 - 50887538
Alignment:
Q  122 agtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatattt 221  Q
    |||||| ||||| ||  ||||| |||||||||||||||||| ||| ||| |  || ||| |||||||| ||||||||||||  ||||| |||||||||||    
T  50887414 agtagaggtaatactagctatagcaaaacccactaactattagtgtaagcaaaaccaacgcacaagacatttatttatatggccaagcctttgcatattt 50887513  T
Q  222 cttcatattatccgatgtgagacatt 247  Q
     |||||||||| ||||| | ||||||    
T  50887514 -ttcatattattcgatgcgggacatt 50887538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 13817034 - 13816935
Alignment:
Q  145 caaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatgtgagac 244  Q
    |||||| ||||||||||| || |||| | || ||||||| |||   ||||||||||||| ||||  || ||||||||||||||||| | |||||||||||    
T  13817034 caaaactcactaactatttgtacaagaaataataacacataaggtctttatttatatgaccaagtcttcgcatatttcttcatattcttcgatgtgagac 13816935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 42001999 - 42001905
Alignment:
Q  105 atatataaagtttgaacagtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttat 199  Q
    ||||| |||||||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42001999 atatagaaagtttgaatagtagaagtaatgctacctatagcaaaacctactaactattggtgcaagtattactaacacacaagacttttatttat 42001905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 41997313 - 41997249
Alignment:
Q  286 ttaacttcgtccaattattgtattttttggatttaattttcttctgagttgcaattgaaacacat 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41997313 ttaacttcgtccaattattgtattttttggatttaattttcttctgagttgcaattgaaacacat 41997249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 42000605 - 42000557
Alignment:
Q  191 tttatttatatgatcaagcatttgcatatttcttcatattatccgatgt 239  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42000605 tttatttatatgatcaagcatttgcatatttcttcatattacccgatgt 42000557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 33897307 - 33897214
Alignment:
Q  139 ctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattat 232  Q
    ||||||||||||| ||||| |||||||| ||  | ||||||||||||||||||||||||||||  ||||   ||| ||||||||||| ||||||    
T  33897307 ctataacaaaacctactaattattggtgtaaaaaatactaacacacaagacttttatttatattgtcaaatctttacatatttcttcctattat 33897214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 117 - 247
Target Start/End: Original strand, 8761182 - 8761313
Alignment:
Q  117 tgaacagtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatc-aagcatttgc 215  Q
    |||| ||||||  |||||||  ||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||| | ||| ||||||    
T  8761182 tgaatagtagagataatgctagctataacaaaatccactaacaattggtgcaagaaatactaacacacaagacttttatttatatgaccaaagtatttgc 8761281  T
Q  216 atatttcttcatattatccgatgtgagacatt 247  Q
    |||||||||||||||||| |||||| ||||||    
T  8761282 atatttcttcatattatctgatgtgggacatt 8761313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 37965518 - 37965621
Alignment:
Q  145 caaaacccactaactattggtgcaagtattactaacacacaa-gacttttatttatatgatcaagcatttgcatatttcttcatattatccgatgtgaga 243  Q
    ||||||||| |||||||||||||||| | ||||||||||||| |||||||||||||||   ||||  |||||||||||||||||||||||||||||||||    
T  37965518 caaaacccattaactattggtgcaagaaatactaacacacaaagacttttatttatatatccaagtctttgcatatttcttcatattatccgatgtgaga 37965617  T
Q  244 catt 247  Q
    ||||    
T  37965618 catt 37965621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 10128584 - 10128497
Alignment:
Q  153 actaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatgtg 240  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||| ||||  ||| |||||||||||||||| |||||||||    
T  10128584 actaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatattctccgatgtg 10128497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 15140859 - 15140798
Alignment:
Q  185 aagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatgtgagacat 246  Q
    ||||||||||||||||||| |||   ||| ||||||||||||| ||| |||||||| |||||    
T  15140859 aagacttttatttatatgaccaaatctttacatatttcttcattttaaccgatgtgggacat 15140798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 25550168 - 25550113
Alignment:
Q  146 aaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatg 202  Q
    |||| |||||||||||| || |||| | ||||| |||||||||||||||||||||||    
T  25550168 aaaatccactaactattagtccaagaaatacta-cacacaagacttttatttatatg 25550113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 139 - 247
Target Start/End: Complemental strand, 25889721 - 25889613
Alignment:
Q  139 ctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatg 238  Q
    ||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||| ||| | ||||||||  ||||||| ||||||||||    
T  25889721 ctatagcaaaacccactaactattggtgcaagaaatactaacatacaagacttttatttatatgaccaaacctttgcataactcttcatgttatccgatg 25889622  T
Q  239 tgagacatt 247  Q
    || ||||||    
T  25889621 tgggacatt 25889613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 25579000 - 25579058
Alignment:
Q  211 tttgcatatttcttcatattatccgatgtgagacattattctaattattattattgata 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25579000 tttgcatatttcttcatattatccgatgtgagacattattctaattattattattgata 25579058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 247
Target Start/End: Complemental strand, 30046539 - 30046407
Alignment:
Q  116 ttgaacagtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgc 215  Q
    ||||| |||||| |||| |||  ||||| ||||||| ||||||||||| | |||| | |||||||||||||  |||||||||||||| |||||  |||||    
T  30046539 ttgaatagtagaggtaacgctagctatagcaaaaccgactaactattg-tacaagaaatactaacacacaaagcttttatttatatggtcaagtctttgc 30046441  T
Q  216 ata--tttcttcatattatccgatgtgagacatt 247  Q
    |||  ||| ||||||||||||||| |||||||||    
T  30046440 atattttttttcatattatccgatatgagacatt 30046407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 254
Target Start/End: Complemental strand, 31141483 - 31141386
Alignment:
Q  157 actattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcatattatccgatgtgagacattattctaa 254  Q
    |||||||||| ||| | ||||||||| |||||||||||||||||||   ||   ||||||||||||||| |||| || |||||||||| || ||||||    
T  31141483 actattggtgtaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctattctctgatgtgagacttttttctaa 31141386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 122 - 262
Target Start/End: Complemental strand, 34807 - 34670
Alignment:
Q  122 agtagaagtaatgctgcctataacaaaacccactaactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatattt 221  Q
    ||||||||||||  |  ||||| ||||||||||||||||||||||| | || ||||||||||  ||||||||||||||||||  |||||||| |||||||    
T  34807 agtagaagtaatattagctatagcaaaacccactaactattggtgctaataatactaacaca--agacttttatttatatgactaagcattttcatattt 34710  T
Q  222 cttcatattatccgatgtgagacattattctaattattatt 262  Q
     || ||||||||  |||||||||||| |||| |||||||||    
T  34709 ttttatattatctaatgtgagacatt-ttctcattattatt 34670  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 260213 - 260286
Alignment:
Q  155 taactattggtgcaagtattactaacacacaagacttttatttatatgatcaagcatttgcatatttcttcata 228  Q
    |||||||||||||||| | ||||||||||||||  |||||||||| |||  |||  ||||||||||||||||||    
T  260213 taactattggtgcaagaaatactaacacacaaggattttatttatttgactaagtctttgcatatttcttcata 260286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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