View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_36 (Length: 395)
Name: NF0778_low_36
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 90 - 313
Target Start/End: Original strand, 7422817 - 7423040
Alignment:
| Q |
90 |
attttcctaggtgtggtgagcccaaaaatctcctccatattcaaatcctcttttttcacattattaggtaatctccaattaaatccatgcaacaaattag |
189 |
Q |
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||||||||||| || || ||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
7422817 |
attttcctaggagtagtcagcccaaaaatctcctccatattcaaatcctctttcttcatatcattaggtaatctccaattaaatccatgcaacaaattag |
7422916 |
T |
|
| Q |
190 |
ccaaacttgattgtatcaccttaagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactcataatcatgtccttttacatc |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7422917 |
ccaaacttgattgtatcaccttaagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactcataatcatgtccttttacatc |
7423016 |
T |
|
| Q |
290 |
tatattattaccaataaacctctc |
313 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
7423017 |
tatattattaccaataaacctctc |
7423040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 90 - 313
Target Start/End: Original strand, 7415158 - 7415381
Alignment:
| Q |
90 |
attttcctaggtgtggtgagcccaaaaatctcctccatattcaaatcctcttttttcacattattaggtaatctccaattaaatccatgcaacaaattag |
189 |
Q |
| |
|
|||||| ||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7415158 |
attttcttaggtgtagaaagcccaaaaatctcctccatattcaaatcctcctttttcacattattaggtaatgtccaattaaatccatgcaacaaattag |
7415257 |
T |
|
| Q |
190 |
ccaaacttgattgtatcaccttaagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactcataatcatgtccttttacatc |
289 |
Q |
| |
|
||||||||| ||| |||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||| |
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| T |
7415258 |
ccaaacttgtttgaatcaccttaataccaagagggtaaccaggacacatccttctaccagcaccaaatggtaacaactcaaaatcatgtccttttacatc |
7415357 |
T |
|
| Q |
290 |
tatattattaccaataaacctctc |
313 |
Q |
| |
|
||||| ||||||| ||||||||| |
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|
| T |
7415358 |
tatatctttaccaagaaacctctc |
7415381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 90 - 285
Target Start/End: Original strand, 7429223 - 7429418
Alignment:
| Q |
90 |
attttcctaggtgtggtgagcccaaaaatctcctccatattcaaatcctcttttttcacattattaggtaatctccaattaaatccatgcaacaaattag |
189 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |
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|
| T |
7429223 |
attttcttaggtgtagtgagcccaaaaatctcctccatatttaaatcctcttttttcatatcattaggtaatctccaattaaatccatgcaacaagttag |
7429322 |
T |
|
| Q |
190 |
ccaaacttgattgtatcaccttaagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactcataatcatgtcctttta |
285 |
Q |
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|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||| |
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|
| T |
7429323 |
ccaaacttgattgaaccaccttaagaccaagaggataaccaggacacatccttctaccagcacctaatggcaacatcttataatcatgtcctttta |
7429418 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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