View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_38 (Length: 386)
Name: NF0778_low_38
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 114 - 379
Target Start/End: Complemental strand, 50357116 - 50356851
Alignment:
| Q |
114 |
cacaatcattttcgattttt-ctttaaaaacactgcctttcttatgactaggaaagggaagtctttacaaaaaatacagtattcctattaaagtgacgcg |
212 |
Q |
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| T |
50357116 |
cacaatcattttcgattttttctttaaaaacactgcctttcttatgactaggaaagggaagtctttacaaaaa-tacggtaatcctattaaagtgacgcg |
50357018 |
T |
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| Q |
213 |
ttgaattgaatttgatttttacttcttctttttgacaatatggaagtaatagattttctagataatcattctttatgaaattcaacgctgagaaagttag |
312 |
Q |
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| T |
50357017 |
ttgaattgaatttgatttttacttcttctttttgacaatatggaagtaatagattttctagataatcattctttatgaaattcaacgctgagaaagttag |
50356918 |
T |
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| Q |
313 |
aacccgaggatgctttttggacccacttcaaagttcaacaccccacaaaatcgtatcagaataatct |
379 |
Q |
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| T |
50356917 |
aacccgaggatgctttttggacccacttcaaagttcaacaccccacaaaatcgtatcagattaatct |
50356851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 50357200 - 50357146
Alignment:
| Q |
29 |
ataaacaagagcaaagagagtcatcaagaagaattacaatatgattcaatgctgtc |
84 |
Q |
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| T |
50357200 |
ataaacaagagcaaagagagttatcaagaagaattacaatatga-tcaatgctgtc |
50357146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 50359446 - 50359401
Alignment:
| Q |
114 |
cacaatcattttcgatttttctttaaaaacactgcctttcttatga |
159 |
Q |
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| T |
50359446 |
cacagtcattttcgatttttcattaaaaatactgcctttcttatga |
50359401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 50357773 - 50357721
Alignment:
| Q |
114 |
cacaatcattttcgatttttctttaaaaacactgcctttcttatgactaggaa |
166 |
Q |
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||||||| ||||||||| ||||||||||| ||| ||||| |||||||| |||| |
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| T |
50357773 |
cacaatcgttttcgattattctttaaaaatacttccttttttatgacttggaa |
50357721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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