View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_39 (Length: 385)
Name: NF0778_low_39
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 32536521 - 32536869
Alignment:
| Q |
11 |
caaaggaggtgaggtggtcggcgatgttctctgatcccgttttcacgatattcctcctctttgatttgtttttgttcagttgcagannnnnnncct-tga |
109 |
Q |
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| T |
32536521 |
caaaggaggtgaggtggtcagcgatgttctctgatcccgttttcacgatattcctcctctttgatttgtttttgttcagttgcagatttttttcccctga |
32536620 |
T |
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| Q |
110 |
acttnnnnnnnnnnnnnnntcaatcaataaaatagacaaaatttgcagacggtctttaatattcaaagtataattgctctacgtgtctttatattttgaa |
209 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |
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| T |
32536621 |
acttaaaaaaataaaata-tcaatcaataaaatagacaaaaattgcagacggtctttaacattcaaagtataattgctctatctatctttatattttgaa |
32536719 |
T |
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| Q |
210 |
tttgttttatgaaaattttcttcatttatcactatnnnnnnnt--tctctctatatatgatcaaacaatcatttcactatttatctcacatatgtcatga |
307 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32536720 |
tttgttttatgaaaattttcttcatttatcactataaaaaaattctctctctatatatgatcaaacaatcatttcactatttatctcacatatgtcatga |
32536819 |
T |
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| Q |
308 |
gcaaaattgcaactaacttcaaaagtaagta-ttaagtatatcattgaat |
356 |
Q |
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| T |
32536820 |
gcaaaattgcaactaacttcaaaagtaagtatttaagtatatcattgaat |
32536869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 10250224 - 10250282
Alignment:
| Q |
257 |
tctatatatgatcaaacaatcatttcactatttatctcacatatgtcatgagcaaaatt |
315 |
Q |
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||||||||||||||||||||||||| || | ||||||||||| | | |||| ||||||| |
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| T |
10250224 |
tctatatatgatcaaacaatcatttaacaaattatctcacatgttttatgaccaaaatt |
10250282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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