View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_40 (Length: 382)
Name: NF0778_low_40
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 43883022 - 43883386
Alignment:
| Q |
1 |
cctctaaaggaaaatttatctgtagttaatgaatcatcggttagtatttaattcacatacataacaaattataaatagattcaaatatcaactgatggtt |
100 |
Q |
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| T |
43883022 |
cctctaaaggaaaatatatctgtagttaatgaatcatcggttagtatttaattcgcatacataacaaattataaatagattcaaatatcaactgatggtt |
43883121 |
T |
|
| Q |
101 |
ctcatcaatgattcaaatatcttaaagtgataatttactatataggtgtcaaactaagtaatcattaactt-ttaaaatgtttagatttttcaactttct |
199 |
Q |
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| T |
43883122 |
ctcatcaatgattcaaatatcttaaagtgataatttactatataggtgtcaaactaagtaatcattaacttcttaaaatgtttagatttttcaactttct |
43883221 |
T |
|
| Q |
200 |
tcacaaatttaatttcaggtaccataaaaagccccagtattggcacacctaaagctccaaaacggtggcagtaaaataggaggcagtacttgtagctaca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43883222 |
tcacaaatttaatttcaggtaccataaaaagccccagtattggcacacctaaagctccaaaacggtggcagtaaaataggaggcagtacttgtagctaca |
43883321 |
T |
|
| Q |
300 |
attaaattgcatagtcttcacaatttggcacgtgctatgtaaatagggattcagattccacgcag |
364 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43883322 |
attaaattgcatagtcttcaaaatttggcacgtgctatgtaaatagggattcagattccatgcag |
43883386 |
T |
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