View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0778_low_42 (Length: 380)
Name: NF0778_low_42
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 51815057 - 51814697
Alignment:
| Q |
1 |
gattggcataaaggaaaagtacatcaaaatacatcttctctctgattatttctcatcaaaatttttgttttggttacgatcgagctatctatcttaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51815057 |
gattggcataaaggaaaagtacatcaaaatacatcttctctctgattatttctcatcaaaatttttgttttggttacgatcgagctatctatcttaattc |
51814958 |
T |
|
| Q |
101 |
tcatataattaaatataacatacagttaatcatagtatagccgtatattatgtacttaatagtatcaatctctggattattgattttccacggccaaagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51814957 |
tcatataattaaatataacatacagttaaccatagtatagccgtatattatgtacttaatagtatcaatctctggattattgattttccacggccaaagt |
51814858 |
T |
|
| Q |
201 |
ttgataccaataatcgatggttaaattgcaagaattccagttgaaaatatttgatcccttgcataaggtgaacttgataattccacagaccttgatgctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51814857 |
ttgataccaataatcgatggttaaattgcaagaattccagttgaaaatatttgatcccttgcataaggtgaacttgataattccacagaccttgatgctt |
51814758 |
T |
|
| Q |
301 |
ctgaaccacacctctctttgcgttcatccatcattatttgacttgaacgacactctgtgct |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51814757 |
ctgaaccacacctctctttgcgttcatccatcattatttgacttgaacgacactctgtgct |
51814697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 594 times since January 2019
Visitors: 5845