View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_44 (Length: 374)
Name: NF0778_low_44
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 294
Target Start/End: Complemental strand, 54734641 - 54734357
Alignment:
| Q |
8 |
cgaagaatataggatttggatgcaaagaaaaggaaggttttggagcacaccactgaaatatcttagcaggtttggagttgtggcagccagcttatgcaga |
107 |
Q |
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|||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54734641 |
cgaaaaatgtaggatttggacgcaaagaaaaggaaggttttggagcacaccactgaaatatcttagcaggtttggagttgtggcagccagcttatgcaga |
54734542 |
T |
|
| Q |
108 |
gttggaaacaagcacagatcatgcaaaacttgactggcaataagcaaaccagtcttgtgcggtctcgtctttgcaattgcaattcttctgaataacaaat |
207 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54734541 |
gttggaaacaagcacagatcatgcaaaactagactgccaataagcaaaccagtcttgtgcggtctcgtctttgcaattgcaattcttctgaataacaaat |
54734442 |
T |
|
| Q |
208 |
tatcattaatgaaaaagatagttcaaaatcttttannnnnnnnaaggaagttaaaaatcttttatttcctttaaatattattgtata |
294 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
54734441 |
tatcattaatgaaaaagatagttcaaaatctttt--tttttttaaggaagtccaaaatcttttatttcctttaaatattattgtata |
54734357 |
T |
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