View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_45 (Length: 363)
Name: NF0778_low_45
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 30 - 350
Target Start/End: Original strand, 12035479 - 12035798
Alignment:
| Q |
30 |
aaattttatttatattaatgatcgaaggatgtactatgaaatgacatgttagaataatcattaacacactcaattttgaatgatgatgattcaagtatgg |
129 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12035479 |
aaattttgtttatattaatgatcgaagggtgtactatgaaatgacatgttagcataatcattcacacactcaattttgaatgatgatgattcaagtatgg |
12035578 |
T |
|
| Q |
130 |
ctcttgcacttatcatgatgcatgaaattttgttcaatgacactttcacgtatttactttcccatggtaacttcttccgcacatttacacataatttctc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12035579 |
ctcttgcacttatcatgatgcatgaaattttgttcaatgacactttcacgtatttactttcccatggtaacttcttccgcacatttacacataatttctc |
12035678 |
T |
|
| Q |
230 |
agaatacaacacacagtgtaataaacgtatgggattgagcttactagtaccgctaatctaaacactacgaaaagaacgtgggtttgtgctcttgcaaatt |
329 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12035679 |
acaatacaacacacagtgtaataaacgtatgggattgagcttactagtaccgctaatctaaacactacgaaaagaacgt-ggtttgtgctcttgcaaatt |
12035777 |
T |
|
| Q |
330 |
tgggtactttaaaccctcttc |
350 |
Q |
| |
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||||||||||||||||||||| |
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| T |
12035778 |
tgggtactttaaaccctcttc |
12035798 |
T |
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