View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_47 (Length: 359)
Name: NF0778_low_47
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_47 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 359
Target Start/End: Original strand, 20170789 - 20171136
Alignment:
| Q |
12 |
acagatcatcattcatgtcaagagacatcacattgtgctnnnnnnnnggtgtgaaaattgaaatgacagttaaattgtaacaaattagtttttgtttgtt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20170789 |
acagatcatcattcatgtcaagagacatcacattgtgctaaaaaaaaggtgtgaaaattgaaatgacagttaaattgtaacaaattagtttttgtttgtt |
20170888 |
T |
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| Q |
112 |
tgttaaaacatcatataatatgcgaccaagtgagtatgtatgagatatatgtatatgagaccgaggagtaattaaaagtgacagcaactgagagacaagg |
211 |
Q |
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| T |
20170889 |
tgttaaaacatcatataatatgcgaccaagtgagtatgtatgagatatatgtatatgagaccgaggagtaattaaaagtgacagcaactgagagacaagg |
20170988 |
T |
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| Q |
212 |
agagaaacccatcttggagaaacagaacacatgcaaatgattcggtggcacaagcattctagacacaacagatttgctcgtgtcctgcttctacaacaag |
311 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||||| |
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| T |
20170989 |
agagaaacccatcttggagaaacagagcacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgcttctccaacaag |
20171088 |
T |
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| Q |
312 |
gagatatcagcctatataaaccattacacccagagtatgatgaaagtt |
359 |
Q |
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||| | |||||||||||||||||||||||| |||| ||||||||||| |
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| T |
20171089 |
gagttctcagcctatataaaccattacacctcgagtttgatgaaagtt |
20171136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 359
Target Start/End: Original strand, 44392499 - 44392846
Alignment:
| Q |
12 |
acagatcatcattcatgtcaagagacatcacattgtgctnnnnnnnnggtgtgaaaattgaaatgacagttaaattgtaacaaattagtttttgtttgtt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392499 |
acagatcatcattcatgtcaagagacatcacattgtgctaaaaaaaaggtgtgaaaattgaaatgacagttaaattgtaacaaattagtttttgtttgtt |
44392598 |
T |
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| Q |
112 |
tgttaaaacatcatataatatgcgaccaagtgagtatgtatgagatatatgtatatgagaccgaggagtaattaaaagtgacagcaactgagagacaagg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392599 |
tgttaaaacatcatataatatgcgaccaagtgagtatgtatgagatatatgtatatgagaccgaggagtaattaaaagtgacagcaactgagagacaagg |
44392698 |
T |
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| Q |
212 |
agagaaacccatcttggagaaacagaacacatgcaaatgattcggtggcacaagcattctagacacaacagatttgctcgtgtcctgcttctacaacaag |
311 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||||| |
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| T |
44392699 |
agagaaacccatcttggagaaacagagcacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgcttctccaacaag |
44392798 |
T |
|
| Q |
312 |
gagatatcagcctatataaaccattacacccagagtatgatgaaagtt |
359 |
Q |
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||| | |||||||||||||||||||||||| |||| ||||||||||| |
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| T |
44392799 |
gagttctcagcctatataaaccattacacctcgagtttgatgaaagtt |
44392846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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