View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_48 (Length: 354)
Name: NF0778_low_48
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 7 - 326
Target Start/End: Original strand, 31041191 - 31041509
Alignment:
| Q |
7 |
tcgaataatattatatgaatcgtctgattaagatcacattgtttagattttaatggtgtcataccttgatttagtggtttgtcttattaagaataaatgg |
106 |
Q |
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| T |
31041191 |
tcgaatagtattatatgaatcgtctgattaagatcacattttttagattttaatggtgtcataccttgacttac-ggtttgtcttattaagaataaatgg |
31041289 |
T |
|
| Q |
107 |
ttgagatcatgtgactgcattaatgcatgattatctcgaccttaaggaattcatttctctccgactccaaaacacctatgcttatttcgccaatttcata |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31041290 |
ttgagatcatgtgactgcattaatgcatgattatctcgaccttaaggaattcatttctctccgactccaaaacacctatgcttatttcgccaatttcata |
31041389 |
T |
|
| Q |
207 |
aatctatctaaataacacactgttatacatcaattttctttatctacatcaaacattttaatctcctcccgtacnnnnnnnnncacattttactttcttt |
306 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31041390 |
aatgtatctaaataacacactgttatacatcaattttctttatctacatcaaacattttaatctcctcccgtacaaaaaaaaacacattttactttcttt |
31041489 |
T |
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| Q |
307 |
attaaatgattctagattct |
326 |
Q |
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|||||||||||||||||||| |
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| T |
31041490 |
attaaatgattctagattct |
31041509 |
T |
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