View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_49 (Length: 351)
Name: NF0778_low_49
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 45653009 - 45652697
Alignment:
| Q |
15 |
tattggataaatgttctggtaaaaataagcgaaccggaacacactttgtatgag--ttttctggtagaaaattatgaatagaataacttagaagatgttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45653009 |
tattggataaatgttctggtaaaaataagcgaaccggaacacactttgtatgagagttttctggtagaaaattatgaatagaataacttagaagatgttt |
45652910 |
T |
|
| Q |
113 |
ccaaaattctttgtgtaccggagaagatatgaccacaaatctgggttgtaaaaatagaacttactctctcttcttatctcgtgtctactagaacnnnnnn |
212 |
Q |
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|||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45652909 |
ccaaaattctttgtgtaccggaaaagatagaaccaaaaatctgggttgtaaaaatagaacttactttctcttcttatctcgtgtctactagaacttgttt |
45652810 |
T |
|
| Q |
213 |
nnnaaaatgtgttagnnnnnnnnnnnnnttgagcattttaatttgtatatatgaggggaaaatggacagtttagtcaaaatatatggggtgagg--gtat |
310 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
45652809 |
ttgaaaatgtgttagaaaaagtaaaaaattgagcattttaatttgtatatatgagggcaaaatggacagtttagtcaaaatatatggggtgagggtgtat |
45652710 |
T |
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| Q |
311 |
aattgtaggtggt |
323 |
Q |
| |
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||||||||||||| |
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| T |
45652709 |
aattgtaggtggt |
45652697 |
T |
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