View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_50 (Length: 350)
Name: NF0778_low_50
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_50 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 154 - 350
Target Start/End: Original strand, 9247739 - 9247935
Alignment:
| Q |
154 |
cctcgtgatcaatcaaggacaatctgtcattgcagccacacatctgacaaactaattttgtttcttcttatgttgcaaaatgcatgtaatgaaaaccttg |
253 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9247739 |
cctcatgatcaatcaaggacaatctgtcattgcagccacgcatctgacaaactaattttgtttcttcttatgttgcaaaatgcatgtaatgaaaaccttg |
9247838 |
T |
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| Q |
254 |
cattgtattttaagttggaattgcaaacattgtttttcggtaaccagattccaggtacaaactatctactgccgcttaacagcgtctgatctccgtt |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9247839 |
cattgtattttaagttggaattgcaaacattgtttttcagtaaccagattccaggtacaaactatctactgccgcttaacagcgtctgatctccgtt |
9247935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 9247600 - 9247671
Alignment:
| Q |
15 |
atcatcataagaacactgcattgactttgcagaaactccaaacaccttcacactgcatcatttaaagacggt |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9247600 |
atcatcataagaacactgcattgactttgcagaaactccaaataccttcacactgcatcatttaaagacggt |
9247671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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