View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0778_low_54 (Length: 339)

Name: NF0778_low_54
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0778_low_54
NF0778_low_54
[»] chr5 (8 HSPs)
chr5 (30-267)||(1033761-1033998)
chr5 (34-267)||(1044148-1044381)
chr5 (31-267)||(1065763-1065999)
chr5 (31-267)||(1071490-1071726)
chr5 (121-263)||(1640649-1640791)
chr5 (31-252)||(1058686-1058907)
chr5 (121-211)||(1053462-1053552)
chr5 (42-82)||(1046919-1046959)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 267
Target Start/End: Complemental strand, 1033998 - 1033761
Alignment:
Q  30 ataacctcccgcaaccatgaaagtaccattgaaagcctttctcatgggcaccagactgtaagggctttcaatcgtttcatcatttgattttattcttggt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1033998 ataacctcccgcaaccatgaaagtaccattgaaagcctttctcatgggcaccagactgtaagggctttcaatcgtttcatcatttgattttattcttggt 1033899  T
Q  130 tccaccatgtgacagtaaagaatattgtacttactgagggcattaaccatataaagtcccaattctgtgggattggagtctctagattctgaatgttccg 229  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1033898 tccaccatgtgacagtaaagaatattgtacttattgagggcattaaccatataaagtcccaattctgtgggattggagtctctagattctgaatgttccg 1033799  T
Q  230 caaaaggtgataatctaattccaactctctctgctcct 267  Q
    |||||||||||||||||||||||||||| |||||||||    
T  1033798 caaaaggtgataatctaattccaactctttctgctcct 1033761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 34 - 267
Target Start/End: Complemental strand, 1044381 - 1044148
Alignment:
Q  34 cctcccgcaaccatgaaagtaccattgaaagcctttctcatgggcaccagactgtaagggctttcaatcgtttcatcatttgattttattcttggttcca 133  Q
    ||||| ||| |||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||  |  ||||||||||||||||||||    
T  1044381 cctcctgcagccatgaaagagccattgaaagcctttctcattggcaccagactgtaagggctttcaatcgtttcagaagctgattttattcttggttcca 1044282  T
Q  134 ccatgtgacagtaaagaatattgtacttactgagggcattaaccatataaagtcccaattctgtgggattggagtctctagattctgaatgttccgcaaa 233  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||  |||||||||||||||    ||||| || ||| |||||    
T  1044281 ccatgtgacagtaaagaatattgtacttattgagggcattaaccatatgaagtcccaattcattgggattggagtctccgctttctgcatattctgcaaa 1044182  T
Q  234 aggtgataatctaattccaactctctctgctcct 267  Q
    |||||||| ||||||||||||| | |||||||||    
T  1044181 aggtgatagtctaattccaactttatctgctcct 1044148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 31 - 267
Target Start/End: Complemental strand, 1065999 - 1065763
Alignment:
Q  31 taacctcccgcaaccatgaaagtaccattgaaagcctttctcatgggcaccagactgtaagggctttcaatcgtttcatcatttgattttattcttggtt 130  Q
    |||||||| |||||||||||||| || ||||| ||||||||||| ||||| || ||||  |||| |||| |  ||||| ||   | ||| ||||||||||    
T  1065999 taacctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaacagttttcattcttggtt 1065900  T
Q  131 ccaccatgtgacagtaaagaatattgtacttactgagggcattaaccatataaagtcccaattctgtgggattggagtctctagattctgaatgttccgc 230  Q
    ||||||| |||||||||||||||   || ||| |||||||||| ||||||||||||||||||||  |||| |||||||||| | |||||| ||  |||||    
T  1065899 ccaccatatgacagtaaagaataccatatttattgagggcattgaccatataaagtcccaattcattggggttggagtctccacattctgcatactccgc 1065800  T
Q  231 aaaaggtgataatctaattccaactctctctgctcct 267  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  1065799 aaaaggtgataatcttattccaactctttctgctcct 1065763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 31 - 267
Target Start/End: Complemental strand, 1071726 - 1071490
Alignment:
Q  31 taacctcccgcaaccatgaaagtaccattgaaagcctttctcatgggcaccagactgtaagggctttcaatcgtttcatcatttgattttattcttggtt 130  Q
    |||||||| |||||||||||||| || ||||| ||||||||||| ||||| || ||||  |||| |||| |  ||||| ||   | | | ||||||||||    
T  1071726 taacctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaacagttatcattcttggtt 1071627  T
Q  131 ccaccatgtgacagtaaagaatattgtacttactgagggcattaaccatataaagtcccaattctgtgggattggagtctctagattctgaatgttccgc 230  Q
    ||||||||||||| |||||||||  ||| ||| |||||||||||||||||||||||||||||||| | || |||||||||| | |||||||||  || ||    
T  1071626 ccaccatgtgacaataaagaataccgtatttattgagggcattaaccatataaagtcccaattctttagggttggagtctccacattctgaatactctgc 1071527  T
Q  231 aaaaggtgataatctaattccaactctctctgctcct 267  Q
    ||||||||||||||| ||||||||||| |||| ||||    
T  1071526 aaaaggtgataatcttattccaactctttctgttcct 1071490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 121 - 263
Target Start/End: Original strand, 1640649 - 1640791
Alignment:
Q  121 attcttggttccaccatgtgacagtaaagaatattgtacttactgagggcattaaccatataaagtcccaattctgtgggattggagtctctagattctg 220  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||   ||||||||||||| | |||||     
T  1640649 attcttggttccaccatgtgacagtaaagaatattgtatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattctc 1640748  T
Q  221 aatgttccgcaaaaggtgataatctaattccaactctctctgc 263  Q
     || ||| || ||||| |||||||||||||||||||| |||||    
T  1640749 catattctgcgaaaggcgataatctaattccaactctttctgc 1640791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 31 - 252
Target Start/End: Complemental strand, 1058907 - 1058686
Alignment:
Q  31 taacctcccgcaaccatgaaagtaccattgaaagcctttctcatgggcaccagactgtaagggctttcaatcgtttcatcatttgattttattcttggtt 130  Q
    |||||||| ||| ||| |||||| || ||||| ||||||||||| ||||| || |||| || || ||||||  |||||| |   | ||| ||||||||||    
T  1058907 taacctcctgcagccaggaaagtgcctttgaaggcctttctcatcggcacaaggctgtgagagcattcaattctttcattaacagttttcattcttggtt 1058808  T
Q  131 ccaccatgtgacagtaaagaatattgtacttactgagggcattaaccatataaagtcccaattctgtgggattggagtctctagattctgaatgttccgc 230  Q
    ||||||  |||||||||||||||   || ||| ||||||||||| |||||||||||||||||||| ||||||| ||||||  | |||||| || ||| |     
T  1058807 ccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctga 1058708  T
Q  231 aaaaggtgataatctaattcca 252  Q
    ||||||||||||||||||||||    
T  1058707 aaaaggtgataatctaattcca 1058686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 1053552 - 1053462
Alignment:
Q  121 attcttggttccaccatgtgacagtaaagaatattgtacttactgagggcattaaccatataaagtcccaattctgtgggattggagtctc 211  Q
    ||||||||||||||||| ||||| |||||||||   || ||| |||||||||| |||||||||||||||||||||  |||||| |||||||    
T  1053552 attcttggttccaccatatgacaataaagaataccatatttattgagggcattcaccatataaagtcccaattcttggggatttgagtctc 1053462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 1046959 - 1046919
Alignment:
Q  42 aaccatgaaagtaccattgaaagcctttctcatgggcacca 82  Q
    |||||||||||| |||||||||||||||||||  |||||||    
T  1046959 aaccatgaaagtgccattgaaagcctttctcactggcacca 1046919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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