View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_59 (Length: 329)
Name: NF0778_low_59
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_59 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 30 - 320
Target Start/End: Original strand, 6923113 - 6923403
Alignment:
| Q |
30 |
catatatcctcacccaagaacctctttcgcgaatcaatgtgttcttattccattgaactggtttggagnnnnnnntattaaaataatcaacaacttccga |
129 |
Q |
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| T |
6923113 |
catatatcctcacccaagaacctctttcgcgaatcaatgtgtccttattccattgaactagtttggagaaaaaattattaaaataatcaacaacttccga |
6923212 |
T |
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| Q |
130 |
taaaataatactaacatctccatcatccaaagctcgcaaaaacaccttgttagctcccaatggaataatgacaagtttaacaaaacccgcatcataaatc |
229 |
Q |
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| T |
6923213 |
taaaataatactaacatctccatcatccaaagctcgcaaaaacaccttgttagctcccaatggaataatgacaagtttaacaaaacccgcatcataaatc |
6923312 |
T |
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| Q |
230 |
taacgttgtaacactagtatggcatctccgttcaagacaaacaccaccacgcctttcgttgcccaagtcaagtcattaacagtagaattat |
320 |
Q |
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| T |
6923313 |
tgacgttgtaacactagtatggcatctccgttcaagacaaacaccaccacgcctttcgttgcccaagtcaagtcattaacagtagaattat |
6923403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 123 - 316
Target Start/End: Complemental strand, 20505895 - 20505702
Alignment:
| Q |
123 |
cttccgataaaataatactaacatctccatcatccaaagctcgcaaaaacaccttgttagctcccaatggaataatgacaagtttaacaaaacccgcatc |
222 |
Q |
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|||| |||||||| | ||| ||||||| ||||||| || || |||||||||||||| ||||||||| |||||||| ||||| || |||| ||||| || |
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| T |
20505895 |
cttctgataaaattaaactgacatctctgtcatccatagttctcaaaaacaccttgtcagctcccaacggaataattacaagattttcaaagcccgcgtc |
20505796 |
T |
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| Q |
223 |
ataaatctaacgttgtaacactagtatggcatctccgttcaagacaaacaccaccacgcctttcgttgcccaagtcaagtcattaacagtagaa |
316 |
Q |
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| T |
20505795 |
aaaaattcggcgttgtagcataggtatggcatctccattcaagacagacaccaccacacccttcgtcgcccacgacatatcattaacagtagaa |
20505702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 13152986 - 13152917
Alignment:
| Q |
173 |
accttgttagctcccaatggaataatgacaagtttaacaaaacccgcatcataaatctaacgttgtaaca |
242 |
Q |
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||||||| ||| ||||| ||||||||||| | || |||| |||||||||||||||| ||||||||||| |
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| T |
13152986 |
accttgtcagcgcccaaaggaataatgaccaaattttcaaaccccgcatcataaatctgacgttgtaaca |
13152917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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