View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0778_low_6 (Length: 700)

Name: NF0778_low_6
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0778_low_6
NF0778_low_6
[»] chr7 (2 HSPs)
chr7 (291-690)||(3087119-3087518)
chr7 (93-244)||(3087598-3087749)
[»] chr6 (13 HSPs)
chr6 (486-687)||(4299050-4299251)
chr6 (490-686)||(4622843-4623039)
chr6 (486-687)||(4626653-4626854)
chr6 (490-558)||(4557956-4558024)
chr6 (637-687)||(4259534-4259584)
chr6 (490-676)||(4586349-4586535)
chr6 (166-247)||(4623136-4623217)
chr6 (496-542)||(4612957-4613003)
chr6 (621-677)||(4255985-4256041)
chr6 (650-687)||(4602494-4602531)
chr6 (616-675)||(3172455-3172514)
chr6 (490-547)||(4571814-4571871)
chr6 (496-548)||(4599011-4599063)
[»] chr8 (2 HSPs)
chr8 (490-558)||(16685519-16685587)
chr8 (584-676)||(20863170-20863262)
[»] chr5 (1 HSPs)
chr5 (628-687)||(24107077-24107136)
[»] scaffold0288 (1 HSPs)
scaffold0288 (616-680)||(3077-3141)
[»] scaffold0477 (2 HSPs)
scaffold0477 (498-539)||(3930-3971)
scaffold0477 (607-687)||(4039-4119)


Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 291 - 690
Target Start/End: Complemental strand, 3087518 - 3087119
Alignment:
Q  291 tatgaataatattagtaacgaactctttgtcaaacacttttcaacacactctttctgatttacattcatgagtcccacataatttgacgagactcataaa 390  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| |||||||||    
T  3087518 tatgaataatattagtaacaaactctttgtcaaacacttttcaacgcactctttctgattaacattcatgagtcccacataatttaacgaaactcataaa 3087419  T
Q  391 tgttaaccaatnnnnnnngagtgttagaaagcgttagagagtgtattcctagtaagctattgacttcttctataattatgacaagcagatgagatttta- 489  Q
    ||| ||||| |       | ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||      
T  3087418 tgtaaaccagtgaaaaaagtgtgttagaaagcgtt-gagagtgtattcctagcaagctattgacttcttctataattatgacaagcatatgagagtttct 3087320  T
Q  490 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat 589  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3087319 gacgccagagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat 3087220  T
Q  590 ttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattctgt 689  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3087219 ttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattctgt 3087120  T

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Target: chr7; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 3087749 - 3087598
Alignment:
Q  93 ctatgtaatatgagagtatgttcgttcaaatttgtttcataaagga-aatttagtttaaagactttatagcaagttgtcgagtagatatactcaatgaga 191  Q
    ||||||||||||||||||||||||||  |||||||||||||||| | |||||||||| ||||| ||||||||| ||||||||| |||||||| |||||||    
T  3087749 ctatgtaatatgagagtatgttcgtttgaatttgtttcataaagtataatttagtttgaagaccttatagcaatttgtcgagttgatatacttaatgaga 3087650  T
Q  192 acttttaatttgacggttggattgataaaatttaatattgataatgagtcatt 244  Q
    |||||||||| ||||||||||||||||||||||||||| || |||||||||||    
T  3087649 acttttaattcgacggttggattgataaaatttaatatcga-aatgagtcatt 3087598  T

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Target: chr6 (Bit Score: 78; Significance: 6e-36; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 486 - 687
Target Start/End: Original strand, 4299050 - 4299251
Alignment:
Q  486 tttagacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccatttta 585  Q
    |||||||| |||| |||||||||||||||||||||||||||||||| |||| |||||  ||||| | ||||||  |  | ||| ||| |||  |||  ||    
T  4299050 tttagacatcaaactagactgtattccaggattgcagaactttcgattgaaagatctaactgactttataaggagtacaaatccaaatgatgtcatggta 4299149  T
Q  586 gaatttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatatt 685  Q
    ||||||| |||||||| ||  ||||| || |||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||||||| || ||||    
T  4299150 gaatttgccattgaagcggcagatagatttcacaaagcatctgctattgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctctatt 4299249  T
Q  686 ct 687  Q
    ||    
T  4299250 ct 4299251  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 490 - 686
Target Start/End: Complemental strand, 4623039 - 4622843
Alignment:
Q  490 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat 589  Q
    |||||| ||||||||||| |||| |||||| ||||||||||  | |||||| |||||||| | |||||| ||  ||| | ||| |||  |||  ||||||    
T  4623039 gacaccgaagtagactgtgttcctggattgaagaactttcggttaaaggatttgcctgactttataaggattacagagccaaatgatgtcatggtagaat 4622940  T
Q  590 ttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattc 686  Q
    || ||||||||| ||  ||  | || |||||| ||||||||||||| ||||| |||||| |||||||||||| |||||  ||||||||||| |||||    
T  4622939 ttctcattgaagcggcagaacgatttcacaaatcctctgctattatttttaatacttataatgaacttgagactgatgcgatgaatgcgctctattc 4622843  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 486 - 687
Target Start/End: Complemental strand, 4626854 - 4626653
Alignment:
Q  486 tttagacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccatttta 585  Q
    ||||||||||||| |||| |||||||| ||||||||||||||||| |||||||| || | | || | ||||||     | |||  || |||  |||  ||    
T  4626854 tttagacaccaaactagattgtattcccggattgcagaactttcggctgaaggaccttcttaactttataaggacaacaaatcctaatgatgtcatggta 4626755  T
Q  586 gaatttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatatt 685  Q
    |||||| ||||||||| ||  ||||| || |||| ||| || |||||| | || |||||||| |||||||||||| ||||||||||||||||||| ||||    
T  4626754 gaatttctcattgaagcggcagatagatttcacagagcatcggctattgttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgctctatt 4626655  T
Q  686 ct 687  Q
    ||    
T  4626654 ct 4626653  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 490 - 558
Target Start/End: Complemental strand, 4558024 - 4557956
Alignment:
Q  490 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagg 558  Q
    ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  4558024 gacactaaagtggattgtattccaggattgcagaactttcgactgaaggatctgcctgactttataagg 4557956  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 637 - 687
Target Start/End: Original strand, 4259534 - 4259584
Alignment:
Q  637 tttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattct 687  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  4259534 tttaacacttatgatgaacttgagagtgatgtaatgaatgtgctctattct 4259584  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 676
Target Start/End: Complemental strand, 4586535 - 4586349
Alignment:
Q  490 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat 589  Q
    ||||| ||||| |||||||||||||||||| ||||||||||||| |||||| |||||||| | |||||| ||   |||| ||| ||| | ||  ||||||    
T  4586535 gacactaaagtggactgtattccaggattggagaactttcgactaaaggatttgcctgactttataaggattactgatccaaatgattcgatcatagaat 4586436  T
Q  590 ttgtcattgaagtgg--gggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatg 676  Q
    || |||||||||  |  || |  |||  ||||||| ||||||| |||| ||||| |||| ||||||||||||||  |||||||| ||||    
T  4586435 ttatcattgaaggcgcaggaacggct--cacaaagactctgcttttatttttaatacttctgatgaacttgagaaggatgtaataaatg 4586349  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 4623217 - 4623136
Alignment:
Q  166 ttgtcgagtagatatactcaatgagaacttttaatttgacggttggattgataaaatttaatattgataatgagtcattaag 247  Q
    |||| |||| |||||||||||| |||| ||||||||||||||||||||||||||||| | || || | ||||||| ||||||    
T  4623217 ttgttgagttgatatactcaataagaatttttaatttgacggttggattgataaaatctgatgtttacaatgagttattaag 4623136  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 4612957 - 4613003
Alignment:
Q  496 aaagtagactgtattccaggattgcagaactttcgactgaaggatct 542  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  4612957 aaagtggactgtattcaaggattgcagaactttcgactgaaggatct 4613003  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 621 - 677
Target Start/End: Original strand, 4255985 - 4256041
Alignment:
Q  621 agcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgc 677  Q
    ||||||||||||| | |||||||||||| ||||||||||||| |||||| |||||||    
T  4255985 agcctctgctattgtttttaacacttataatgaacttgagagcgatgtattgaatgc 4256041  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 687
Target Start/End: Complemental strand, 4602531 - 4602494
Alignment:
Q  650 atgaacttgagagtgatgtaatgaatgcgctatattct 687  Q
    |||||||||||||||||||||||||||| |||||||||    
T  4602531 atgaacttgagagtgatgtaatgaatgcactatattct 4602494  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 675
Target Start/End: Complemental strand, 3172514 - 3172455
Alignment:
Q  616 cacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaat 675  Q
    |||||||| ||||||||| | || ||||||| | ||||||||||||||||||| ||||||    
T  3172514 cacaaagcttctgctattgttttcaacacttctaatgaacttgagagtgatgttatgaat 3172455  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 547
Target Start/End: Complemental strand, 4571871 - 4571814
Alignment:
Q  490 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctg 547  Q
    ||||| ||||| |||||||| |||||| || ||||||||||||||| |||| ||||||    
T  4571871 gacactaaagtggactgtatgccaggactgaagaactttcgactgagggatttgcctg 4571814  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 496 - 548
Target Start/End: Complemental strand, 4599063 - 4599011
Alignment:
Q  496 aaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctga 548  Q
    |||||||| |||||||| ||| |||| |||||||||||||| ||||| |||||    
T  4599063 aaagtagattgtattcctggactgcaaaactttcgactgaaagatcttcctga 4599011  T

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Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 490 - 558
Target Start/End: Original strand, 16685519 - 16685587
Alignment:
Q  490 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagg 558  Q
    ||||| ||||| |||||||||||||||||||||||  ||||||||||||||||||||||| | ||||||    
T  16685519 gacactaaagtggactgtattccaggattgcagaatattcgactgaaggatctgcctgactttataagg 16685587  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 584 - 676
Target Start/End: Original strand, 20863170 - 20863262
Alignment:
Q  584 tagaatttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatg 676  Q
    |||||||| |||||||||| |  ||||| || |||| ||||||||||||| | || || ||||   |||| |||||||||||||| |||||||    
T  20863170 tagaatttctcattgaagtagtagatagatttcacagagcctctgctattgttttcaatactttcaatgagcttgagagtgatgttatgaatg 20863262  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 628 - 687
Target Start/End: Complemental strand, 24107136 - 24107077
Alignment:
Q  628 gctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattct 687  Q
    |||||| | |||||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  24107136 gctattgtttttaacgcttatgatgaacttgagagtgatgtaatgaatacgctctattct 24107077  T

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Target: scaffold0288 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 616 - 680
Target Start/End: Original strand, 3077 - 3141
Alignment:
Q  616 cacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgct 680  Q
    |||| ||| ||||| ||| | |||||||||||| |||||||||||||||||||| ||||||||||    
T  3077 cacagagcttctgcaattgtttttaacacttataatgaacttgagagtgatgtactgaatgcgct 3141  T

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Target: scaffold0477 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 498 - 539
Target Start/End: Original strand, 3930 - 3971
Alignment:
Q  498 agtagactgtattccaggattgcagaactttcgactgaagga 539  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  3930 agtagacggtattccaggattgcagaactttcggctgaagga 3971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 607 - 687
Target Start/End: Original strand, 4039 - 4119
Alignment:
Q  607 gatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattct 687  Q
    ||||| || |||||||||||  ||||| | || |||||||| |||||||||||||| | |||| ||||||| || ||||||    
T  4039 gatagattccacaaagcctcgactattgttttcaacacttacgatgaacttgagagcggtgtattgaatgctctctattct 4119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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