View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0778_low_62 (Length: 324)

Name: NF0778_low_62
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0778_low_62
NF0778_low_62
[»] scaffold0066 (1 HSPs)
scaffold0066 (96-295)||(4247-4445)
[»] chr6 (1 HSPs)
chr6 (96-295)||(21551986-21552185)
[»] chr7 (2 HSPs)
chr7 (99-294)||(8773987-8774182)
chr7 (96-294)||(18770543-18770741)
[»] chr2 (1 HSPs)
chr2 (99-294)||(28397352-28397547)
[»] chr3 (2 HSPs)
chr3 (167-229)||(10619546-10619608)
chr3 (200-245)||(21737767-21737812)
[»] chr5 (3 HSPs)
chr5 (175-228)||(20472074-20472127)
chr5 (194-243)||(30506876-30506925)
chr5 (194-243)||(30547219-30547268)
[»] chr8 (1 HSPs)
chr8 (194-237)||(45566690-45566733)
[»] scaffold0637 (1 HSPs)
scaffold0637 (200-237)||(44-81)


Alignment Details
Target: scaffold0066 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 96 - 295
Target Start/End: Original strand, 4247 - 4445
Alignment:
Q  96 catcatcacacctacctaatttagtttcttgaagacataaaatccaaggacacttctcctgcaccaacgagcgaacatcctttttcttttcaagccctcc 195  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  4247 catcatcacacctacctaatttagtttcttgaaggcataaaatccaaggacgcttttcctgcaccaacgagcgaacatcctttctcttttcaagccctcc 4346  T
Q  196 caaacccctaacattccaagacaccaacttcatctcccacactctccccctgatccccttcacctactccacctactaaacagtcttacccaatccccta 295  Q
    ||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  4347 cagtcccctaacattccaagacaccaacttcatctcccacactct-cccctgatccccttcgcctactccacctactaagcagtcttacccgatccccta 4445  T

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Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 96 - 295
Target Start/End: Original strand, 21551986 - 21552185
Alignment:
Q  96 catcatcacacctacctaatttagtttcttgaagacataaaatccaaggacacttctcctgcaccaacgagcgaacatcctttttcttttcaagccctcc 195  Q
    |||||||||||||||||||||||||||||||||| || |||||||||| || ||||||||||||||||||||||||||||||| ||||||||  ||||||    
T  21551986 catcatcacacctacctaatttagtttcttgaaggcaaaaaatccaagaacgcttctcctgcaccaacgagcgaacatcctttctcttttcacaccctcc 21552085  T
Q  196 caaacccctaacattccaagacaccaacttcatctcccacactctccccctgatccccttcacctactccacctactaaacagtcttacccaatccccta 295  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||    
T  21552086 cagccccctaacattccaagacaccaacttcatctcccacactctccccctgatccccttcgcctactccacctactaagcagtcgtacccgatccccta 21552185  T

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Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 99 - 294
Target Start/End: Original strand, 8773987 - 8774182
Alignment:
Q  99 catcacacctacctaatttagtttcttgaagacataaaatccaaggacacttctcctgcaccaacgagcgaacatcctttttcttttcaagccctcccaa 198  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  8773987 catcacacctacctaatttagtttcctgaaggcataaaatccaaggacgcttctccttcaccaacgagcgaacctcctttttcttttcaagccctcccaa 8774086  T
Q  199 acccctaacattccaagacaccaacttcatctcccacactctccccctgatccccttcacctactccacctactaaacagtcttacccaatcccct 294  Q
     |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||||||| || |||||||  |||||||    
T  8774087 ccccctaacattccaagacaccaacttcatctcccacactctctccctgaaccccttcgcctacaccacctactaagcattcttacctgatcccct 8774182  T

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Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 96 - 294
Target Start/End: Original strand, 18770543 - 18770741
Alignment:
Q  96 catcatcacacctacctaatttagtttcttgaagacataaaatccaaggacacttctcctgcaccaacgagcgaacatcctttttcttttcaagccctcc 195  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||    
T  18770543 catcatcacacctacctaatttagtttcctgaaggcataaaatccaaggacgcttctccttcaccaacgagcgaacctcctttttcttttcaagccctcc 18770642  T
Q  196 caaacccctaacattccaagacaccaacttcatctcccacactctccccctgatccccttcacctactccacctactaaacagtcttacccaatcccct 294  Q
     || |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||||||| || |||||||  |||||||    
T  18770643 aaaccccctaacattccaagacaccaacttcatctcccacactctcaccctgaaccccttcgcctacaccacctactaagcattcttacctgatcccct 18770741  T

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Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 99 - 294
Target Start/End: Complemental strand, 28397547 - 28397352
Alignment:
Q  99 catcacacctacctaatttagtttcttgaagacataaaatccaaggacacttctcctgcaccaacgagcgaacatcctttttcttttcaagccctcccaa 198  Q
    ||||||||||||||||||||||||| ||||| ||||||| |||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| ||    
T  28397547 catcacacctacctaatttagtttcctgaaggcataaaaaccaaggacgcttctccttcaccaacgagcgaacctcctttttcttttcaagccctcctaa 28397448  T
Q  199 acccctaacattccaagacaccaacttcatctcccacactctccccctgatccccttcacctactccacctactaaacagtcttacccaatcccct 294  Q
     |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||||||| || |||||||  |||||||    
T  28397447 ccccctaacattccaagacaccaacttcatctcccacactctctccctgaaccccttcgcctacaccacctactaagcattcttacctgatcccct 28397352  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 10619608 - 10619546
Alignment:
Q  167 cgaacatcctttttcttttcaagccctcccaaacccctaacattccaagacaccaacttcatc 229  Q
    |||||||||||| ||||||| |  |||||||| ||||||||||||||||| | ||||||||||    
T  10619608 cgaacatcctttctcttttctaagcctcccaatcccctaacattccaagaaatcaacttcatc 10619546  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 21737812 - 21737767
Alignment:
Q  200 cccctaacattccaagacaccaacttcatctcccacactctccccc 245  Q
    ||||||||||||||||| | |||||||||||||||| | |||||||    
T  21737812 cccctaacattccaagataacaacttcatctcccacgccctccccc 21737767  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 20472074 - 20472127
Alignment:
Q  175 ctttttcttttcaagccctcccaaacccctaacattccaagacaccaacttcat 228  Q
    ||||||||| |||| ||| ||||||||||||| |||||| ||||||||||||||    
T  20472074 ctttttcttctcaatcccacccaaacccctaatattccatgacaccaacttcat 20472127  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 30506925 - 30506876
Alignment:
Q  194 cccaaacccctaacattccaagacaccaacttcatctcccacactctccc 243  Q
    ||||| ||||| ||||||||||| | |||||||||||||||||| |||||    
T  30506925 cccaacccccttacattccaagataacaacttcatctcccacaccctccc 30506876  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 30547268 - 30547219
Alignment:
Q  194 cccaaacccctaacattccaagacaccaacttcatctcccacactctccc 243  Q
    ||||| ||||| ||||||||||| | |||||||||||||||||| |||||    
T  30547268 cccaacccccttacattccaagataacaacttcatctcccacaccctccc 30547219  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 45566733 - 45566690
Alignment:
Q  194 cccaaacccctaacattccaagacaccaacttcatctcccacac 237  Q
    ||||||||||||| || |||||||||||||||||||| ||||||    
T  45566733 cccaaacccctaatatcccaagacaccaacttcatcttccacac 45566690  T

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Target: scaffold0637 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 44 - 81
Alignment:
Q  200 cccctaacattccaagacaccaacttcatctcccacac 237  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  44 cccctaacattccaagataacaacttcatctcccacac 81  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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