View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_63 (Length: 323)
Name: NF0778_low_63
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 83 - 319
Target Start/End: Complemental strand, 3709530 - 3709299
Alignment:
| Q |
83 |
cacagaactcaaaacctagaagcactttacagatcaatgtattgtacaaccacaatccgtccggccaccggaagtgattttcctgccactgagattaaga |
182 |
Q |
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| T |
3709530 |
cacagaactcaaaacctagaagcactttacagatcaatgta-----caaccacaatccgtccggccactggaagtgattttcctgccactgagattaaga |
3709436 |
T |
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| Q |
183 |
aaaacttgtgttatataatatgataaaaatactcacatgctgatgcagaatagcatcaattatttttaagcaaatcccagtcacaaatcacaataagcag |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3709435 |
aaaacttgtgttatataatatgataaaaatactcacatgctgatgcagaatagcatcaattatttttaagcaaatcccggtcacaaatcacaataagcag |
3709336 |
T |
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| Q |
283 |
taactcaagcactgatacaaattaacctcaactattg |
319 |
Q |
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| T |
3709335 |
taactcaagcactgatacaaattaacctcaactattg |
3709299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 167 - 323
Target Start/End: Complemental strand, 3718590 - 3718434
Alignment:
| Q |
167 |
gccactgagattaagaaaaacttgtgttatataatatgataaaaatactcacatgctgatgcagaatagcatcaattatttttaagcaaatcccagtcac |
266 |
Q |
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||||||| ||||||||||| || ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3718590 |
gccactggaattaagaaaaatttatgttaattaatatgataaaaatactcacatgatgatgcagaatagcatcaattatttttaagcaaatcccagtcac |
3718491 |
T |
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| Q |
267 |
aaatcacaataagcagtaactcaagcactgatacaaattaacctcaactattgctaa |
323 |
Q |
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| T |
3718490 |
aaatcacaataagcagtaactcaagcactgatataaattaacctcaaccattgctaa |
3718434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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