View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_64 (Length: 322)
Name: NF0778_low_64
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_64 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 93 - 322
Target Start/End: Complemental strand, 5099900 - 5099668
Alignment:
| Q |
93 |
agtttgcagaaaccatgggagacagcatc---ctgatactgaaatgtgatgcatattataagttgtattaggcgacgctaatggctgaacaatctggctt |
189 |
Q |
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| T |
5099900 |
agtttgcagaaaccatgggaggcagcatcatcctgatactgaaatgtgatgcgtattataagttgtattaggcgacgctaaaagctgaataatctggctt |
5099801 |
T |
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| Q |
190 |
caactatgtactgagtggtggctaacagtgtcatagtcgtgattcgggttaaaagctgcttatagcggctgagaatcagccaaaacctaacacaagttca |
289 |
Q |
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| T |
5099800 |
caactatgtacttagtggtggctaacagtgtcatagtcgtgattcgggttaaaagctgcttatagcggctgagaatcagccaaaacctaacacaagttca |
5099701 |
T |
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| Q |
290 |
ccacacctttcataatgactacccagtttgaca |
322 |
Q |
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| T |
5099700 |
ccacacctttcataatgactacccagtttgaca |
5099668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 81 - 278
Target Start/End: Complemental strand, 5135171 - 5134980
Alignment:
| Q |
81 |
gcacagaagggtagtttgcagaaaccatgggagacagcatcctgatactgaaatgtgatgcatattataagttgtattaggcgacgctaatggctgaaca |
180 |
Q |
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| T |
5135171 |
gcacagaagaggagtttgcagaaaccatgggagacagcatcctgatactgaaatgtgat------tataagttgcattaggcgacgctaaaagctgaaca |
5135078 |
T |
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| Q |
181 |
atctggcttcaactatgtactgagtggtggctaacagtgtcatagtcgtgattcgggttaaaagctgcttatagcggctgagaatcagccaaaaccta |
278 |
Q |
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| T |
5135077 |
atctggcttcaactatgtactgagtggtgactaacagtgtcatagtcgtgattcgggttaaaagctgcttatagcggctgagaatcagccaaaaccta |
5134980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 95 - 262
Target Start/End: Original strand, 5057969 - 5058142
Alignment:
| Q |
95 |
tttgcagaaaccatgggagacagcatcctgatactgaaatgtgatgcatattataagt----tgt---attaggcgacgctaatggctgaacaatctggc |
187 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| ||| |||||| |||| ||| ||||||||||||||| |
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| T |
5057969 |
tttgcagaaaccatgggtggcagcatcctgatactgaaatgtgctgcatattataagtcgcctgtcacattaggtgacgataaaagctgaacaatctggc |
5058068 |
T |
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| Q |
188 |
ttcaactatgtactgagtggtggctaacagtgtcatagtcgtgattcgggttaaaagctgcttatagcggctgag |
262 |
Q |
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| T |
5058069 |
ttcaactatgtatttagtggtggctaacagtgtcataatcgtgactggagtt-aaagctgcttatcgaggctgag |
5058142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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