View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0778_low_65 (Length: 321)

Name: NF0778_low_65
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0778_low_65
NF0778_low_65
[»] chr4 (13 HSPs)
chr4 (12-241)||(1604686-1604916)
chr4 (22-118)||(2895141-2895238)
chr4 (22-118)||(5908488-5908585)
chr4 (22-118)||(1505330-1505427)
chr4 (22-118)||(5599242-5599339)
chr4 (22-119)||(13701947-13702045)
chr4 (22-119)||(13712440-13712538)
chr4 (26-106)||(24627362-24627442)
chr4 (26-118)||(4852031-4852124)
chr4 (60-130)||(3329498-3329568)
chr4 (53-118)||(6735770-6735836)
chr4 (52-114)||(20349579-20349641)
chr4 (60-124)||(7451196-7451261)
[»] chr2 (10 HSPs)
chr2 (14-135)||(29747119-29747241)
chr2 (52-134)||(18010887-18010969)
chr2 (55-230)||(24837081-24837258)
chr2 (52-138)||(38211320-38211406)
chr2 (50-134)||(33125410-33125494)
chr2 (26-106)||(31347385-31347465)
chr2 (22-118)||(31314636-31314733)
chr2 (52-134)||(33119182-33119264)
chr2 (22-85)||(29742307-29742370)
chr2 (60-108)||(17863231-17863279)
[»] chr3 (11 HSPs)
chr3 (26-124)||(2747075-2747174)
chr3 (22-118)||(18111082-18111179)
chr3 (36-118)||(5835267-5835350)
chr3 (24-118)||(19440706-19440801)
chr3 (40-110)||(5938385-5938455)
chr3 (25-118)||(37489365-37489459)
chr3 (24-104)||(19359868-19359948)
chr3 (22-118)||(14521645-14521742)
chr3 (26-118)||(28034329-28034422)
chr3 (12-114)||(7782829-7782931)
chr3 (14-114)||(27170121-27170221)
[»] chr1 (12 HSPs)
chr1 (24-118)||(22207297-22207392)
chr1 (25-134)||(14150122-14150231)
chr1 (22-118)||(15088252-15088349)
chr1 (22-118)||(22210860-22210957)
chr1 (22-118)||(22219610-22219707)
chr1 (14-125)||(17914242-17914353)
chr1 (52-118)||(7898981-7899048)
chr1 (26-118)||(14115544-14115637)
chr1 (14-114)||(1944752-1944851)
chr1 (52-114)||(7064025-7064087)
chr1 (24-110)||(44193460-44193546)
chr1 (52-104)||(51843949-51844001)
[»] chr7 (10 HSPs)
chr7 (22-118)||(42786499-42786596)
chr7 (22-118)||(48477390-48477487)
chr7 (39-114)||(3737876-3737951)
chr7 (22-118)||(19802239-19802336)
chr7 (26-118)||(21959210-21959303)
chr7 (52-119)||(1454813-1454880)
chr7 (52-105)||(4340549-4340602)
chr7 (22-110)||(3079024-3079112)
chr7 (52-86)||(20920365-20920399)
chr7 (63-134)||(41572629-41572701)
[»] chr8 (7 HSPs)
chr8 (52-114)||(25004017-25004079)
chr8 (22-118)||(20811016-20811113)
chr8 (22-109)||(4844420-4844507)
chr8 (26-118)||(25336116-25336209)
chr8 (24-104)||(5557130-5557210)
chr8 (27-118)||(3166424-3166516)
chr8 (62-123)||(24974987-24975048)
[»] chr6 (7 HSPs)
chr6 (22-118)||(5131336-5131433)
chr6 (52-118)||(31113657-31113724)
chr6 (25-86)||(8887240-8887302)
chr6 (22-118)||(33301124-33301221)
chr6 (59-110)||(6406206-6406257)
chr6 (22-84)||(34256189-34256251)
chr6 (22-118)||(28144380-28144477)
[»] scaffold0046 (1 HSPs)
scaffold0046 (26-118)||(89831-89924)
[»] chr5 (6 HSPs)
chr5 (21-119)||(22301874-22301972)
chr5 (54-134)||(19078726-19078807)
chr5 (24-104)||(41527884-41527964)
chr5 (14-119)||(21098947-21099052)
chr5 (52-110)||(26075667-26075725)
chr5 (52-133)||(28739541-28739623)
[»] scaffold0024 (1 HSPs)
scaffold0024 (62-110)||(63468-63516)
[»] scaffold0158 (2 HSPs)
scaffold0158 (52-118)||(17-84)
scaffold0158 (22-86)||(37443-37507)
[»] scaffold0043 (1 HSPs)
scaffold0043 (60-119)||(70162-70222)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 1604686 - 1604916
Alignment:
Q  12 tcatgtaaagacagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatcccttta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1604686 tcatgtaaagacagatggcgattataggttccctgaagtcgcctacaacctaggataggtggaactcactgagacctcctgtctcaccccaatcccttta 1604785  T
Q  112 tttattttcagatgagcaggttgttcgcaagtagaagggttcgtgctgaagatcagcaggaggaacgaatgatttacctttatatac-cccatccgtacc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || || ||||||    
T  1604786 tttattttcagatgagcaggttgttcgcaagtagaagggttcgtgctgaagatcagcaggaggaacggatgatttacctttatatacacctattcgtacc 1604885  T
Q  211 agtcttggatattttccatatgtagtctgtg 241  Q
    |||||||||||||||||||| ||||||||||    
T  1604886 agtcttggatattttccatacgtagtctgtg 1604916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 2895141 - 2895238
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    ||||||||||||  ||||||||| || || ||||| ||||||||||||||||||||||||||||| || |||| |||||||||||| |||||||||||    
T  2895141 acagatggcgatcctaggttccccgaggttgcctatagcctaggataggtggaactcactgagacatcttgtctcaccccaatcccttttatttattt 2895238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 5908585 - 5908488
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    ||||||||||||  ||||||||| || || ||||| ||||||||||||||||||||||||||||| || |||| |||||||||||| |||||||||||    
T  5908585 acagatggcgatcctaggttccccgaggttgcctatagcctaggataggtggaactcactgagacatcttgtctcaccccaatcccttttatttattt 5908488  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 1505427 - 1505330
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    ||||||||||||  ||||||||||||  | ||||||| |||||||||||||||||||||| |||| || |||| |||||||||||| |||||||||||    
T  1505427 acagatggcgatcctaggttccctgagattgcctacaacctaggataggtggaactcactaagacatcttgtctcaccccaatcccttttatttattt 1505330  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 5599339 - 5599242
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatcc-ctttatttattt 118  Q
    |||||||| |||  |||||||||||| || ||||||| |||||||||| |||||||||||||||| || |||| |||||||||||  |||||||||||    
T  5599339 acagatggggatcctaggttccctgaggttgcctacaacctaggatagatggaactcactgagacatcttgtctcaccccaatcctttttatttattt 5599242  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 13702045 - 13701947
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttatttt 119  Q
    ||||||||||||  |||||| |||||  | || |||| ||||||||||||||||||||||||||| || | || |||||||||||| ||||||||||||    
T  13702045 acagatggcgatcgtaggtttcctgagattgcgtacaacctaggataggtggaactcactgagacatcttatctcaccccaatcccttttatttatttt 13701947  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 13712538 - 13712440
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttatttt 119  Q
    ||||||||||||  |||||| |||||  | || |||| ||||||||||||||||||||||||||| || | || |||||||||||| ||||||||||||    
T  13712538 acagatggcgatcgtaggtttcctgagattgcgtacaacctaggataggtggaactcactgagacatcttatctcaccccaatcccttttatttatttt 13712440  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 24627442 - 24627362
Alignment:
Q  26 atggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatcc 106  Q
    |||||||| |||||||||||||  | ||||||| ||||||||||||||||||| ||||||| || |||  |||||||||||    
T  24627442 atggcgatcataggttccctgagattgcctacatcctaggataggtggaactcgctgagacatcatgtgtcaccccaatcc 24627362  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 4852124 - 4852031
Alignment:
Q  26 atggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    ||||||||  ||||||||| || || ||||||| |||||||||||||||||||| ||| || || |||| || ||||||||| |||||||||||    
T  4852124 atggcgatcctaggttccccgaggttgcctacaacctaggataggtggaactcagtgaaacatcttgtctcatcccaatcccttttatttattt 4852031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 3329498 - 3329568
Alignment:
Q  60 cctaggataggtggaactcactgagacctcctgtcacaccccaatccctttatttattttcagatgagcag 130  Q
    |||| |||||||||||||||||||||| || |||| ||||||||||| |||| ||  |||||||| |||||    
T  3329498 cctaagataggtggaactcactgagacatcttgtctcaccccaatccttttactttatttcagataagcag 3329568  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 6735770 - 6735836
Alignment:
Q  53 cctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatcc-ctttatttattt 118  Q
    |||||||| ||||||||||||||||||||||||| || |||| || ||||||||  |||||||||||    
T  6735770 cctacagcttaggataggtggaactcactgagacatcatgtctcatcccaatccattttatttattt 6735836  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 20349579 - 20349641
Alignment:
Q  52 gcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttattt 114  Q
    ||||||||||||| ||||||||||||||||||||| || |||| || |||||| | |||||||    
T  20349579 gcctacagcctagtataggtggaactcactgagacatcttgtctcatcccaattcttttattt 20349641  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 7451261 - 7451196
Alignment:
Q  60 cctaggataggtggaactcactgagacctcctgtcacaccccaatcc-ctttatttattttcagat 124  Q
    |||||||||||||||||| ||||||||||  |||| |||||||||||  ||||||| |||||||||    
T  7451261 cctaggataggtggaacttactgagaccttatgtctcaccccaatcctttttatttcttttcagat 7451196  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 29747241 - 29747119
Alignment:
Q  14 atgtaaagacagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttat- 112  Q
    ||||| |||||||||| ||| |||| ||||| ||  ||||||||| ||||||||| ||||||||||||||||| ||||||| |||||||||||||||||     
T  29747241 atgtagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaactcactgagacatcctgtctcaccccaatccctttatc 29747142  T
Q  113 ttattttcagatgagcaggttgt 135  Q
    |||||||||||| |||| |||||    
T  29747141 ttattttcagataagcatgttgt 29747119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 18010969 - 18010887
Alignment:
Q  52 gcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttatttattttcagatgagcaggttg 134  Q
    |||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||  |||||||| | |||||||    
T  18010969 gcctgcagcctaggataggtggaactcactgagacatcctgtctcaccccaatccctttatttcatttcagataaacaggttg 18010887  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 24837258 - 24837081
Alignment:
Q  55 tacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttatttattttcagatgagcaggttgttcgcaagtagaagggttcg 154  Q
    |||| |||| |||||| ||||||||||||| | || |||| |||| ||||||||||||||||||||| || ||||| || | |||||| ||||||||||     
T  24837258 tacatcctaagataggcggaactcactgagccatcatgtctcacctcaatccctttatttattttcaaataagcagattatgcgcaagcagaagggttca 24837159  T
Q  155 tgctgaagatcagcaggaggaacga--atgatttacctttatataccccatccgtaccagtcttggatattttccata 230  Q
    ||  | ||||||| | ||||||  |  ||||||||||||||||||| | || | ||||||||||  ||||||||||||    
T  24837158 tgtcggagatcagtaagaggaagcaagatgatttacctttatatacacgattcataccagtcttatatattttccata 24837081  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 38211406 - 38211320
Alignment:
Q  52 gcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttatttattttcagatgagcaggttgttcg 138  Q
    ||||||| | ||||||||||||||||||||||||  ||||||| ||||||||||| |||||||  |||||||| |||||||||||||    
T  38211406 gcctacaacttaggataggtggaactcactgagagatcctgtctcaccccaatccttttattttatttcagatcagcaggttgttcg 38211320  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 33125410 - 33125494
Alignment:
Q  50 tcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttatttattttcagatgagcaggttg 134  Q
    |||||||||| ||||||||||||||||||||| |||| || |||| |||||||||||||||||||  ||| |||| |||||||||    
T  33125410 tcgcctacagtctaggataggtggaactcactaagacatcatgtctcaccccaatccctttattttattttagataagcaggttg 33125494  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 31347385 - 31347465
Alignment:
Q  26 atggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatcc 106  Q
    ||||||||  ||||||| ||||  | ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||    
T  31347385 atggcgatcctaggttctctgagattgcctacaacctaggataggtggaactcactgagacatcctgtctcaccccaatcc 31347465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 31314733 - 31314636
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatc-cctttatttattt 118  Q
    ||||||||||||  ||||||||||||  | ||||||| |||||||||||||||||||||||| || || |||| |||||| ||| | |||||||||||    
T  31314733 acagatggcgatcctaggttccctgagattgcctacaacctaggataggtggaactcactgaaacatcatgtctcaccccgatctcttttatttattt 31314636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 33119182 - 33119264
Alignment:
Q  52 gcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttatttattttcagatgagcaggttg 134  Q
    ||||| || |||||||| |||||||||||| |||| || |||| |||||||||||||||||||  ||| |||| |||||||||    
T  33119182 gcctatagtctaggataagtggaactcactaagacatcatgtctcaccccaatccctttatttcattttagataagcaggttg 33119264  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 29742370 - 29742307
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgaga 85  Q
    |||||||||||| |||||||||||||  | ||||||| ||||  ||||||||||||||||||||    
T  29742370 acagatggcgatcataggttccctgagattgcctacaacctaaaataggtggaactcactgaga 29742307  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 17863279 - 17863231
Alignment:
Q  60 cctaggataggtggaactcactgagacctcctgtcacaccccaatccct 108  Q
    ||||| ||||||||||||||||||||| || |||| ||||||| |||||    
T  17863279 cctagaataggtggaactcactgagacatcatgtctcaccccagtccct 17863231  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 2747075 - 2747174
Alignment:
Q  26 atggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattttcagat 124  Q
    ||||||||  ||||||||||||  | ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||    
T  2747075 atggcgatcctaggttccctgagattgcctacaacctaggataggtggaactcactgagacatcctgtctcaccccaatcccttttatttattttcagat 2747174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 18111179 - 18111082
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    ||||||||||||  ||||||||||||  | ||||||| ||||||||||||||||||||||||||| || |||| |||||| ||||| |||||||||||    
T  18111179 acagatggcgatcctaggttccctgatattgcctacaacctaggataggtggaactcactgagacatcatgtctcaccccgatcccttttatttattt 18111082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 5835350 - 5835267
Alignment:
Q  36 taggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    ||||||||||||  | ||||| ||||||||||||||||||||||||||||| |||| || |||||||||||| |||||||||||    
T  5835350 taggttccctgagattgcctatagcctaggataggtggaactcactgagacatcctatctcaccccaatcccttttatttattt 5835267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 19440801 - 19440706
Alignment:
Q  24 agatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    ||||||||||  |||||||| |||  | ||||||||||||||||||||||||||||||||||| || |||| |||| ||||||| |||||||||||    
T  19440801 agatggcgatcctaggttccttgagattgcctacagcctaggataggtggaactcactgagacatcatgtctcacctcaatcccttttatttattt 19440706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 5938455 - 5938385
Alignment:
Q  40 ttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatcccttt 110  Q
    ||||||||| | ||||| ||||||||||||||||||||||||||||| |||| || |||||||||||||||    
T  5938455 ttccctgaaattgcctatagcctaggataggtggaactcactgagacatcctatctcaccccaatcccttt 5938385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 37489459 - 37489365
Alignment:
Q  25 gatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    |||||||||  |||||| |||||  | ||||||| ||||||||||||||||||||| ||||| || |||| |||||||||||| |||||||||||    
T  37489459 gatggcgatcctaggtttcctgagattgcctacaacctaggataggtggaactcaccgagacatcttgtctcaccccaatcccttttatttattt 37489365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 19359868 - 19359948
Alignment:
Q  24 agatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaat 104  Q
    ||||||||||  ||||||||| ||  | ||||||||||||||||||||||||||||||||||| |  |||| |||||||||    
T  19359868 agatggcgatcctaggttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaat 19359948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 14521645 - 14521742
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatcc-ctttatttattt 118  Q
    ||||||||||||  ||| ||||| ||  | |||||||||||||||||||||||||||||| |||| |  |||| |||||||||||  |||||||||||    
T  14521645 acagatggcgatcttagattccccgagattgcctacagcctaggataggtggaactcactaagacattttgtctcaccccaatcctttttatttattt 14521742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 28034422 - 28034329
Alignment:
Q  26 atggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    ||||||||  |||||||| |||  | ||| ||| |||||||||||||||| |||||||||| || |||| |||||||||||| |||||||||||    
T  28034422 atggcgatcctaggttccttgagattgccaacaacctaggataggtggaattcactgagacatcttgtctcaccccaatcccttttatttattt 28034329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 7782931 - 7782829
Alignment:
Q  12 tcatgtaaagacagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatcccttta 111  Q
    ||||||| | ||| |||| ||| |||||||||| ||  | ||||| ||| |||||||||||||||||||| |||| || |||| ||||| ||||| ||||    
T  7782931 tcatgtacaaacaaatggtgatcataggttccccgagattgcctatagcttaggataggtggaactcactaagacatcgtgtctcaccctaatccattta 7782832  T
Q  112 ttt 114  Q
    |||    
T  7782831 ttt 7782829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 27170221 - 27170121
Alignment:
Q  14 atgtaaagacagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttatt 113  Q
    ||||| |||||||||| ||| |||||||||  ||  | |||| || |||| ||||| |||||||||||||||| || |||| |||| |||||  ||||||    
T  27170221 atgtatagacagatggtgatcataggttcctagagattgccttcaacctatgatagatggaactcactgagacatcatgtctcacctcaatcattttatt 27170122  T
Q  114 t 114  Q
    |    
T  27170121 t 27170121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 22207392 - 22207297
Alignment:
Q  24 agatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    ||||||||||  ||||||||||| | | ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  22207392 agatggcgatcttaggttccctgcaattgcctacaacctaggataggtggaactcactgagacatcctgtctcaccccaatcccttttatttattt 22207297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 14150122 - 14150231
Alignment:
Q  25 gatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttatttattttcagat 124  Q
    |||||||||||||||||||| ||  | ||||||||  ||||||||||||||||||| ||||| || |||| ||||||||||| |||||||  ||||||||    
T  14150122 gatggcgattataggttccccgagattgcctacagtttaggataggtggaactcaccgagacatcatgtctcaccccaatccttttattttatttcagat 14150221  T
Q  125 gagcaggttg 134  Q
     |||||||||    
T  14150222 aagcaggttg 14150231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 15088349 - 15088252
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    ||||||||||||  |||||||||||   | ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  15088349 acagatggcgatcctaggttccctgcgattgcctacaacctaggataggtggaactcactgagacatcctgtctcaccccaatcccttttatttattt 15088252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 22210957 - 22210860
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    ||||||||||||  |||||||||||   | ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  22210957 acagatggcgatcctaggttccctgcgattgcctacaacctaggataggtggaactcactgagacatcctgtctcaccccaatcccttttatttattt 22210860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 22219707 - 22219610
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    ||||||||||||  |||||||||||   | ||||||| ||||||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||    
T  22219707 acagatggcgatcctaggttccctgcgattgcctacaacctaggataggtgcaactcactgagacatcctgtctcaccccaatcccttttatttattt 22219610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 17914353 - 17914242
Alignment:
Q  14 atgtaaagacagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttatt 113  Q
    ||||| ||||||||| |||| ||||||||| ||| || |||||||  ||||||||||||||||||||| |||| || |||| || | || ||||||||||    
T  17914353 atgtagagacagatgacgatcataggttccttgaggttgcctacattctaggataggtggaactcactaagacatcatgtctcatctcattccctttatt 17914254  T
Q  114 tattttcagatg 125  Q
    |  |||||||||    
T  17914253 ttatttcagatg 17914242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 7899048 - 7898981
Alignment:
Q  52 gcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    |||||||  |||||||||||||||||||||||||| || |||| |||||||||||| |||||||||||    
T  7899048 gcctacaatctaggataggtggaactcactgagacatcttgtctcaccccaatcccttttatttattt 7898981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 14115544 - 14115637
Alignment:
Q  26 atggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    |||||||| ||||||| || || || || | |||||||||||||||||||| | ||||||| || |||| |||||||||||| |||||||||||    
T  14115544 atggcgatcataggtttcccgaggttgcttgcagcctaggataggtggaacgcgctgagacatcttgtctcaccccaatcccttttatttattt 14115637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 1944752 - 1944851
Alignment:
Q  14 atgtaaagacagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttatt 113  Q
    ||||| ||||| |||||||| ||||| |||| ||  | ||||||| ||||||| |||||||||||||| |||| ||| ||| |||||||||| |||||||    
T  1944752 atgtacagacatatggcgatcataggatccc-gatattgcctacaacctaggaaaggtggaactcactaagacatccggtctcaccccaatcgctttatt 1944850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 7064087 - 7064025
Alignment:
Q  52 gcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttattt 114  Q
    ||||||| ||||||||||||||||||||||||||| |  |||| ||||| ||||| |||||||    
T  7064087 gcctacaacctaggataggtggaactcactgagacattatgtctcaccctaatccttttattt 7064025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 44193460 - 44193546
Alignment:
Q  24 agatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatcccttt 110  Q
    ||||||||||  |||||||| |||  | ||||||| ||||||||||||||||||||| ||||| |   ||| |||||||||||||||    
T  44193460 agatggcgatcctaggttccttgagattgcctacaacctaggataggtggaactcaccgagacatttcgtctcaccccaatcccttt 44193546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 51844001 - 51843949
Alignment:
Q  52 gcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaat 104  Q
    ||||||| | || |||||||||||||||||||||| || |||| |||||||||    
T  51844001 gcctacaccttaagataggtggaactcactgagacatcatgtctcaccccaat 51843949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 42786499 - 42786596
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    ||||||||||||  ||||||||| || || ||||| ||||||||||||||||||||||||||||| || |||| |||||||||||| |||||||||||    
T  42786499 acagatggcgatcctaggttccccgaggttgcctatagcctaggataggtggaactcactgagacatcttgtctcaccccaatcccttttatttattt 42786596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 48477487 - 48477390
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    ||||||||||||  ||||||||| || || ||||| ||||||||||||||||||||||||||||| || |||| |||||||||||| |||||||||||    
T  48477487 acagatggcgatcctaggttccccgaggttgcctatagcctaggataggtggaactcactgagacatcttgtctcaccccaatcccttttatttattt 48477390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 3737876 - 3737951
Alignment:
Q  39 gttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttattt 114  Q
    |||||||||  ||||||||| ||||| ||||||||||||||||||||| || |||| |||||||||||||||||||    
T  3737876 gttccctgagatcgcctacaacctagaataggtggaactcactgagacatcatgtctcaccccaatccctttattt 3737951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 19802336 - 19802239
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatcc-ctttatttattt 118  Q
    ||||||||||||  ||||||||| ||  | ||||||||||||||||||||||||||||||||||| |  |||| |||||||||||  |||||||||||    
T  19802336 acagatggcgatcgtaggttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaatcctttttatttattt 19802239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 21959210 - 21959303
Alignment:
Q  26 atggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatcc-ctttatttattt 118  Q
    ||||||||  ||||||||| ||  | ||||||||||||||||||||||||||||||||||| |  |||| |||||||||||  |||||||||||    
T  21959210 atggcgatcctaggttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaatccattttatttattt 21959303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 1454880 - 1454813
Alignment:
Q  52 gcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttatttatttt 119  Q
    ||||| |||||||||||| |||||||||||||||| | ||||| || |||||||| ||||||||||||    
T  1454880 gcctagagcctaggatagatggaactcactgagacattctgtctcatcccaatccttttatttatttt 1454813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 4340602 - 4340549
Alignment:
Q  52 gcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatc 105  Q
    ||||||||||||||||||||||||||||||||||| |  |||| ||||||||||    
T  4340602 gcctacagcctaggataggtggaactcactgagacattttgtctcaccccaatc 4340549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 3079024 - 3079112
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatcccttt 110  Q
    ||||||||||||  |||||||||||   |  |||||  |||||||||||||||||||| |||||| ||||||| || ||||||||||||    
T  3079024 acagatggcgatcctaggttccctgcgatttcctactacctaggataggtggaactcattgagacatcctgtctcagcccaatcccttt 3079112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 20920365 - 20920399
Alignment:
Q  52 gcctacagcctaggataggtggaactcactgagac 86  Q
    ||||||| |||||||||||||||||||||||||||    
T  20920365 gcctacaacctaggataggtggaactcactgagac 20920399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 41572629 - 41572701
Alignment:
Q  63 aggataggtggaactcactgagacctcctgtcacaccccaatcccttta-tttattttcagatgagcaggttg 134  Q
    ||||||||||||||||||||| ||||  |||| || |||||||| |||| ||| ||||||||| | |||||||    
T  41572629 aggataggtggaactcactgataccttatgtctcatcccaatccatttattttcttttcagataaacaggttg 41572701  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 25004017 - 25004079
Alignment:
Q  52 gcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttattt 114  Q
    ||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||    
T  25004017 gcctacagcctaggataggtggaactcactgagacattctgtctcaccccaatccctttattt 25004079  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 20811016 - 20811113
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatcccttt-atttattt 118  Q
    ||||||||||||  ||||||| ||||  | ||||||| ||||||||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||    
T  20811016 acagatggcgatcctaggttcactgagattgcctacaacctaggataggtggaactcactgagacattctgtctcaccccaatccctttcatttattt 20811113  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 4844420 - 4844507
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctt 109  Q
    ||||||||||||  ||||||||||||  | ||||||| ||||||||||||||||||||||| | | ||||||| ||||||||||||||    
T  4844420 acagatggcgatcctaggttccctgagattgcctacaacctaggataggtggaactcactgcggcatcctgtctcaccccaatccctt 4844507  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 25336209 - 25336116
Alignment:
Q  26 atggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaa-tccctttatttattt 118  Q
    ||||||||  ||||||||||||  | ||||| ||||||||||||||||||||||||| ||| ||||||| |||||||| ||| |||||||||||    
T  25336209 atggcgatcctaggttccctgagattgcctatagcctaggataggtggaactcactgggacatcctgtctcaccccaattccttttatttattt 25336116  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 5557210 - 5557130
Alignment:
Q  24 agatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaat 104  Q
    ||||||||||  ||||||||| ||  | ||||||||||||||||||||||||||||||||||| |  |||| |||||||||    
T  5557210 agatggcgatcctaggttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaat 5557130  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 3166424 - 3166516
Alignment:
Q  27 tggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatc-cctttatttattt 118  Q
    |||||||  ||||||||||||  | ||||||| |||||||||| |||||||||  ||||| || |||| |||||||||| | |||||||||||    
T  3166424 tggcgatcctaggttccctgagattgcctacaacctaggatagatggaactcatcgagacatcatgtctcaccccaatcacttttatttattt 3166516  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 24974987 - 24975048
Alignment:
Q  62 taggataggtggaactcactgagacctcctgtcacaccccaatccctttatttattttcaga 123  Q
    ||||||| ||||||||||||||||  ||||||| ||||||| | |||||||||  |||||||    
T  24974987 taggatatgtggaactcactgagatatcctgtctcaccccatttcctttattttatttcaga 24975048  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 5131336 - 5131433
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    ||||||||||||  ||||||||| ||  | ||||||| ||||||||||||||||||||||||||| || |||| |||||||||||| |||||||||||    
T  5131336 acagatggcgatcctaggttccccgagattgcctacaacctaggataggtggaactcactgagacatcttgtctcaccccaatcccttttatttattt 5131433  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 31113657 - 31113724
Alignment:
Q  52 gcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    ||||||||||||||||||||||||||||||||||| || |||| |||||||||||| |||||||||||    
T  31113657 gcctacagcctaggataggtggaactcactgagacatcatgtctcaccccaatcccttttatttattt 31113724  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 8887240 - 8887302
Alignment:
Q  25 gatggcgattataggt-tccctgaagtcgcctacagcctaggataggtggaactcactgagac 86  Q
    ||||| |||||||||| |||||||| |||||| |||| |||||||||||||||||||||||||    
T  8887240 gatggtgattataggtctccctgaaatcgcctccagcttaggataggtggaactcactgagac 8887302  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 33301124 - 33301221
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatcc-ctttatttattt 118  Q
    |||||| |||||  |||||||||  | || ||||||| |||||||||| |||||||||||||||| || |||| |||||||||||  |||||||||||    
T  33301124 acagattgcgatcctaggttcccccaggttgcctacaacctaggatagatggaactcactgagacatcttgtctcaccccaatcctttttatttattt 33301221  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 6406257 - 6406206
Alignment:
Q  59 gcctaggataggtggaactcactgagacctcctgtcacaccccaatcccttt 110  Q
    |||||||||||||| ||||||||||||| || |||| |||||||||||||||    
T  6406257 gcctaggataggtgcaactcactgagacatcatgtctcaccccaatcccttt 6406206  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 34256189 - 34256251
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgag 84  Q
    ||||||||||||  ||| ||||| ||  | |||||||||||||||||||||||||||||||||    
T  34256189 acagatggcgatcctagattccccgagattgcctacagcctaggataggtggaactcactgag 34256251  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 28144477 - 28144380
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatcc-ctttatttattt 118  Q
    ||||||||||||  ||||||||| ||  | |||||||| |||| ||||||||||||||||||||| |  |||| || ||||||||  |||||||||||    
T  28144477 acagatggcgatcctaggttccccgagattgcctacagtctagtataggtggaactcactgagacattttgtctcagcccaatcctttttatttattt 28144380  T

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Target: scaffold0046 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 89924 - 89831
Alignment:
Q  26 atggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttattt 118  Q
    ||||||||  |||||||||||   | ||||||||||||||||||||||||||||||||||| || |||| ||| |||||||| |||||||||||    
T  89924 atggcgatcctaggttccctgtgattgcctacagcctaggataggtggaactcactgagacatcttgtctcactccaatcccttttatttattt 89831  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 22301972 - 22301874
Alignment:
Q  21 gacagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttatttatttt 119  Q
    |||| |||||||| |||||||||| | | | ||||||| | |||||||||||||||||||| |||| || |||| || |||||||| ||||||||||||    
T  22301972 gacaaatggcgatcataggttccccgcaattgcctacaacttaggataggtggaactcactaagacatcatgtctcatcccaatccttttatttatttt 22301874  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 19078726 - 19078807
Alignment:
Q  54 ctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttatttatttt-cagatgagcaggttg 134  Q
    ||||||||||||||||||||||||||||||||| ||| ||| || |||||||| ||  |||||||| ||||| |||||||||    
T  19078726 ctacagcctaggataggtggaactcactgagacatcccgtctcatcccaatcctttgttttattttacagattagcaggttg 19078807  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 41527964 - 41527884
Alignment:
Q  24 agatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaat 104  Q
    ||||||||||  ||||||||| ||  | ||||||||||||||||||||||||||||||||||| |  |||| |||||||||    
T  41527964 agatggcgatcctaggttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaat 41527884  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 21099052 - 21098947
Alignment:
Q  14 atgtaaagacagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttatt 113  Q
    ||||| ||||| |||||||| |||| ||||| |   | ||| |||||||||||||||||||||||||||| || | ||||| || | |||||| ||||||    
T  21099052 atgtatagacaaatggcgatcatagattccccgcgattgcccacagcctaggataggtggaactcactgaaacattctgtctcatctcaatccttttatt 21098953  T
Q  114 tatttt 119  Q
    ||||||    
T  21098952 tatttt 21098947  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 26075667 - 26075725
Alignment:
Q  52 gcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatcccttt 110  Q
    ||||||| | |||||| ||||||||||||||| || ||||||| |||||||||||||||    
T  26075667 gcctacaacataggattggtggaactcactgatacatcctgtctcaccccaatcccttt 26075725  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 28739623 - 28739541
Alignment:
Q  52 gcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatccctttatttatttt-cagatgagcaggtt 133  Q
    ||||| ||| |||||||||| |||||||||||||| ||  ||| || |||||||| |||||||||||| ||||| ||||||||    
T  28739623 gcctatagcttaggataggttgaactcactgagacatctcgtctcatcccaatccttttatttattttacagatcagcaggtt 28739541  T

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Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 63516 - 63468
Alignment:
Q  62 taggataggtggaactcactgagacctcctgtcacaccccaatcccttt 110  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  63516 taggataggtggaactcactgagacatcctgtcacaccccaatctcttt 63468  T

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Target: scaffold0158 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 17 - 84
Alignment:
Q  52 gcctacagcctaggataggtggaactcactgagacctcctgtcacaccccaatcc-ctttatttattt 118  Q
    ||||||||||||||||||||||||||||||||||| |  |||| |||||||||||  |||||||||||    
T  17 gcctacagcctaggataggtggaactcactgagacattttgtctcaccccaatcctttttatttattt 84  T

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Target: scaffold0158; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 37443 - 37507
Alignment:
Q  22 acagatggcgattataggttccctgaagtcgcctacagcctaggataggtggaactcactgagac 86  Q
    ||||||||||||| ||||||||| ||  | | |||||||||||||||||||||||| | ||||||    
T  37443 acagatggcgattgtaggttccccgagattgtctacagcctaggataggtggaactaaatgagac 37507  T

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Target: scaffold0043 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 70162 - 70222
Alignment:
Q  60 cctaggataggtggaactcactgagacctcctgtcacaccccaatccc-tttatttatttt 119  Q
    ||||||||||||||||||||||||||| || |||| ||||| |||||| ||||||||||||    
T  70162 cctaggataggtggaactcactgagacatcttgtctcacccgaatcccttttatttatttt 70222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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