View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_66 (Length: 321)
Name: NF0778_low_66
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_66 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 99 - 244
Target Start/End: Complemental strand, 6353127 - 6352982
Alignment:
| Q |
99 |
attttatcaccactaaccacaatcacaaacactactccattagaaactatcaaatccatttcctcaaacattttatcaccactaaccacaattataaaca |
198 |
Q |
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| T |
6353127 |
attttatcaccactaaccacaatcacaaacactactccattagaaaccatcaaatctatttcctcaaacatttcatcaccactcagcacaattataaaca |
6353028 |
T |
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| Q |
199 |
ctactcctttagaaacattcaacaccatttcctcgcatatttcatc |
244 |
Q |
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| T |
6353027 |
ctactcctttagaaacattcaacaccatttcctcacatatttcatc |
6352982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 107 - 214
Target Start/End: Complemental strand, 6353188 - 6353081
Alignment:
| Q |
107 |
accactaaccacaatcacaaacactactccattagaaactatcaaatccatttcctcaaacattttatcaccactaaccacaattataaacactactcct |
206 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||| |
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| T |
6353188 |
accactcaccacaatcacaaacactaatccattagaaactatcaaatccatttcctctaacattttatcaccactaaccacaatcacaaacactactcca |
6353089 |
T |
|
| Q |
207 |
ttagaaac |
214 |
Q |
| |
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|||||||| |
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| T |
6353088 |
ttagaaac |
6353081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 6352989 - 6352898
Alignment:
| Q |
99 |
attttatcaccactaaccacaatcacaaacactactccattagaaactatcaaatccatttcctcaaacattttatcaccactaaccacaat |
190 |
Q |
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|||| ||||||||| | |||||||| ||| ||| ||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
6352989 |
atttcatcaccactcatcacaatcaaaaatgctaatccgttagaaactatcaaatccatttcctcaaacatttcatcaccactcaccacaat |
6352898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 232
Target Start/End: Complemental strand, 6353240 - 6353132
Alignment:
| Q |
124 |
caaacactactccattagaaactatcaaatccatttcctcaaacattttatcaccactaaccacaattataaacactactcctttagaaacattcaacac |
223 |
Q |
| |
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||||||||| ||| ||||| |||| ||| |||||||||||||||||| | |||||| |||||||| | |||||||| ||| |||||||| |||| | |
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| T |
6353240 |
caaacactaatcctttagagactaacaacaccatttcctcaaacatttcaaaaccactcaccacaatcacaaacactaatccattagaaactatcaaatc |
6353141 |
T |
|
| Q |
224 |
catttcctc |
232 |
Q |
| |
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||||||||| |
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| T |
6353140 |
catttcctc |
6353132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 232
Target Start/End: Complemental strand, 6353058 - 6352925
Alignment:
| Q |
99 |
attttatcaccactaaccacaatcacaaacactactccattagaaactatcaaatccatttcctcaaacattttatcaccactaaccacaattataaaca |
198 |
Q |
| |
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|||| ||||||||| | |||||| | |||||||||||| |||||||| |||| ||||||||||| | |||| ||||||||| | |||||| | ||| |
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| T |
6353058 |
atttcatcaccactcagcacaattataaacactactcctttagaaacattcaacaccatttcctcacatatttcatcaccactcatcacaatcaaaaatg |
6352959 |
T |
|
| Q |
199 |
ctactcctttagaaacattcaacaccatttcctc |
232 |
Q |
| |
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||| ||| |||||||| |||| |||||||||| |
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|
| T |
6352958 |
ctaatccgttagaaactatcaaatccatttcctc |
6352925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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