View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0778_low_89 (Length: 287)
Name: NF0778_low_89
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_89 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 38931788 - 38931975
Alignment:
| Q |
53 |
gccttataatactaagacctcctttaacatgtataatttggtgctttctatgttcttcatctggagattgaagctttctaattatactttctttcacttt |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38931788 |
gccttataatactaagacctcctttaacatgtataatttggtgctttctatgttgttcatcttgagattgaagctttctaattatactttctttcacttt |
38931887 |
T |
|
| Q |
153 |
caaaacttgtcccaagaaacgtgaatcaaaaccactgaacatgttgttagtttcttcttctttatcaccacgctttctaccactctgt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38931888 |
caaaacttgtcccaagaaacgtgaatcaaaaccactgaacatgttgttagtttcttcttctttatcaccacgctttcttccactctgt |
38931975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 516 times since January 2019
Visitors: 5839