View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_9 (Length: 660)
Name: NF0778_low_9
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 7e-54; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 402 - 624
Target Start/End: Original strand, 29828947 - 29829168
Alignment:
| Q |
402 |
tatttacaaaccaattttcaattgaatgtagactattttttccgaaatgattcatattattatggaaccat---gtttcaagtgaaattaacnnnnnnnn |
498 |
Q |
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| T |
29828947 |
tatttacaaaacaattttctattgaatgtagactattttttccgaaatgattcatattattatggaaccatattgttccaagtgaaattaacaaaagaaa |
29829046 |
T |
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| Q |
499 |
ntatacacatttttattttattnnnnnnnntggatgtgtatttgataacacatttt-ttattcaaacataattagagattaggagactcaacctaaaaat |
597 |
Q |
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| T |
29829047 |
atataaacaattttattttattaaaaaaa-tggatgtgta----ataacacatttttttattcaaacataattagagattaggagactcaatctaaaaat |
29829141 |
T |
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| Q |
598 |
agataactttattatattgacaaggtt |
624 |
Q |
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| T |
29829142 |
agataactttattatattgacaaggtt |
29829168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 280 - 396
Target Start/End: Original strand, 29828869 - 29828983
Alignment:
| Q |
280 |
atttaataaaggatgcgtatttaattttgaaattgcaatatgtgttcttcatcattcacatgaattatataacacatatttatttacaaaacaattttct |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29828869 |
atttaataaaggatgcgtatttaattttgaaattgcaatatgtgttcttcatcattcacatgaattatataacacata--tatttacaaaacaattttct |
29828966 |
T |
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| Q |
380 |
attgaatgtagactatt |
396 |
Q |
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| T |
29828967 |
attgaatgtagactatt |
29828983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 29828702 - 29828803
Alignment:
| Q |
113 |
catgttagtaaaggaagagattcctttttggaccatcgtaaagttgtttgttagaataatgaaccaattgtgtgagaaaatatttatgcataagtaaaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29828702 |
catgttagtaaaggaagagattcctttttggaccatcgtaaagttgtttgttagaataatgaaccaattgggtgagaaaatatttatgcataagtaaaac |
29828801 |
T |
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| Q |
213 |
gt |
214 |
Q |
| |
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|| |
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| T |
29828802 |
gt |
29828803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 29828600 - 29828646
Alignment:
| Q |
11 |
ataatatcaacgggaaaatttttaacctttcgtgacaataaaggtaa |
57 |
Q |
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| T |
29828600 |
ataatatcaaagggaaaatttttaacctttcgtgacaataaaggtaa |
29828646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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