View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_91 (Length: 280)
Name: NF0778_low_91
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_91 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 54734531 - 54734357
Alignment:
| Q |
25 |
agcacagatcatgcaaaacttgactggcaataagcaaaccagtcttgtgcggtctcgtctttgcaattgcaattcttctgaataacaaattatcattaat |
124 |
Q |
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| T |
54734531 |
agcacagatcatgcaaaactagactgccaataagcaaaccagtcttgtgcggtctcgtctttgcaattgcaattcttctgaataacaaattatcattaat |
54734432 |
T |
|
| Q |
125 |
gaaaaagatagttcaaaatcttttannnnnnnaaggaagttaaaaatcttttatttcctttaaatattattgtata |
200 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
54734431 |
gaaaaagatagttcaaaatctttt-tttttttaaggaagtccaaaatcttttatttcctttaaatattattgtata |
54734357 |
T |
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