View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_93 (Length: 277)
Name: NF0778_low_93
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_93 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 27527350 - 27527110
Alignment:
| Q |
30 |
gaaaataggtaatagggcgagtttaactttgcaatcctcctcctttttctttttaaataaatattattttagaggaagtattgtatggtcataaaattta |
129 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27527350 |
gaaaataggtaataggccgagtttagctttgcaatcctcctcctttttcttcttaaataaatattattttagaggaagtattgtatggtcataaaattta |
27527251 |
T |
|
| Q |
130 |
gcacatccttaaaatccagacacacacaatccatataaatatgattctacaaagcatttttcattcatcattcaggttgagcatcatcatccagcagaga |
229 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
27527250 |
gcacatcctttaaatccagacacacacaatccatataaatatgattctacaaagcattttccattcatcattcaggttgagcatcatcatccagcaaaga |
27527151 |
T |
|
| Q |
230 |
tggaacatagatgcttacattcattaatcttgttcatctca |
270 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
27527150 |
tggaacatagatgcttacattcattaatcttgttgatctca |
27527110 |
T |
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