View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_96 (Length: 271)
Name: NF0778_low_96
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_96 |
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Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 22091988 - 22092084
Alignment:
| Q |
50 |
acaaaataggttaaccaaattcttataagaaattttttaatgcaagtcaaaatcttcgaagtttcgctacaatgacatgatatccttacaaaacata |
146 |
Q |
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| T |
22091988 |
acaaaataggttaaccaaattcttataagaaattttttaatgcaagtcaaaatcttcgaagtttcgctacaatgatatgatatccttacaaaacata |
22092084 |
T |
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Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 155 - 246
Target Start/End: Original strand, 22092374 - 22092465
Alignment:
| Q |
155 |
acatttagaaccacatcgtctaaacagcttctcacataacatcaatactaataataataactcttctaaagatgtcaaacacctatgctact |
246 |
Q |
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| T |
22092374 |
acatttagaaccacatcgtctaaacagcttctcacataacatcaatactaatagtaataactcttctaaagatgtcaaacacctttgctact |
22092465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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