View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0778_low_97 (Length: 271)

Name: NF0778_low_97
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0778_low_97
NF0778_low_97
[»] chr1 (10 HSPs)
chr1 (5-221)||(3282442-3282658)
chr1 (216-262)||(284568-284614)
chr1 (217-262)||(24771903-24771948)
chr1 (218-262)||(40783655-40783699)
chr1 (220-262)||(23045279-23045321)
chr1 (217-262)||(33082979-33083024)
chr1 (220-260)||(321863-321903)
chr1 (219-262)||(23526474-23526517)
chr1 (220-262)||(47037852-47037894)
chr1 (217-258)||(41959812-41959853)
[»] chr7 (6 HSPs)
chr7 (219-262)||(25614352-25614395)
chr7 (219-262)||(27814046-27814089)
chr7 (219-262)||(40349196-40349239)
chr7 (218-262)||(36453122-36453166)
chr7 (220-262)||(10981743-10981785)
chr7 (218-262)||(47110685-47110729)
[»] chr8 (11 HSPs)
chr8 (212-262)||(43275391-43275441)
chr8 (218-262)||(11646323-11646367)
chr8 (218-262)||(30999522-30999566)
chr8 (219-262)||(36068315-36068358)
chr8 (220-262)||(7147148-7147190)
chr8 (220-262)||(40058303-40058345)
chr8 (220-262)||(40918731-40918773)
chr8 (213-262)||(3585686-3585735)
chr8 (220-262)||(37345806-37345848)
chr8 (217-262)||(2539927-2539972)
chr8 (218-262)||(11174221-11174265)
[»] chr6 (10 HSPs)
chr6 (216-262)||(8626717-8626763)
chr6 (218-262)||(1605813-1605857)
chr6 (220-262)||(7761535-7761577)
chr6 (220-262)||(29260427-29260469)
chr6 (218-262)||(15064693-15064737)
chr6 (219-262)||(13757442-13757485)
chr6 (219-262)||(17942678-17942721)
chr6 (220-262)||(4129661-4129703)
chr6 (220-262)||(31559738-31559780)
chr6 (218-258)||(15064933-15064973)
[»] chr2 (9 HSPs)
chr2 (217-262)||(23367024-23367069)
chr2 (219-262)||(22388137-22388180)
chr2 (216-262)||(39938405-39938451)
chr2 (217-262)||(1102736-1102781)
chr2 (213-262)||(3519142-3519191)
chr2 (215-262)||(1646522-1646569)
chr2 (211-262)||(40756902-40756953)
chr2 (220-262)||(12969740-12969782)
chr2 (220-261)||(37673743-37673784)
[»] chr5 (9 HSPs)
chr5 (218-262)||(12806851-12806895)
chr5 (219-262)||(30720491-30720534)
chr5 (211-262)||(36561090-36561141)
chr5 (220-262)||(40886610-40886652)
chr5 (220-262)||(25683229-25683271)
chr5 (219-261)||(25773885-25773927)
chr5 (219-262)||(10285057-10285100)
chr5 (219-262)||(23097723-23097766)
chr5 (216-262)||(11319791-11319837)
[»] chr4 (14 HSPs)
chr4 (218-262)||(25704886-25704930)
chr4 (218-262)||(44569072-44569116)
chr4 (219-262)||(14261279-14261322)
chr4 (219-262)||(21310656-21310699)
chr4 (219-262)||(24706246-24706289)
chr4 (220-262)||(12071795-12071837)
chr4 (222-262)||(21661537-21661577)
chr4 (222-262)||(21670301-21670341)
chr4 (218-262)||(22321266-22321310)
chr4 (220-262)||(40122487-40122529)
chr4 (217-262)||(20249011-20249056)
chr4 (221-262)||(21064996-21065037)
chr4 (218-255)||(39295418-39295455)
chr4 (230-262)||(50768097-50768129)
[»] chr3 (10 HSPs)
chr3 (219-262)||(19241667-19241710)
chr3 (219-262)||(29375367-29375410)
chr3 (219-262)||(36881515-36881558)
chr3 (220-262)||(13365078-13365120)
chr3 (220-262)||(46694110-46694152)
chr3 (220-262)||(32834989-32835031)
chr3 (220-262)||(199090-199132)
chr3 (218-258)||(19912177-19912217)
chr3 (218-258)||(38806344-38806384)
chr3 (218-262)||(48820575-48820619)
[»] scaffold0054 (1 HSPs)
scaffold0054 (220-262)||(45688-45730)
[»] scaffold1770 (1 HSPs)
scaffold1770 (220-262)||(396-438)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 3282442 - 3282658
Alignment:
Q  5 aaaaattatagaagttgcttaattaatagtttatctttattggagaacttgacgtgagaaagtggacaacataaaaattagagaacttgatgtgggaaag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3282442 aaaaattatagaagttgcttaattaatagtttatctttattggagaacttgacgtgagaaagtggacaacataaaaattagagaacttgatgtgggaaag 3282541  T
Q  105 tgcataataatatgtcataatatcattaatgtttggatgaaacgcataaattgaaaaaatattcaaattgtttacctttaaaggaaaattaatgcatcat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3282542 tgcataataatatgtcataatatcattaatgtttggatgaaacgcataaattgaaaaaatattcaaattgtttacctttaaaggaaaattaatgcatcat 3282641  T
Q  205 attatcattaattaata 221  Q
    |||||||||||||||||    
T  3282642 attatcattaattaata 3282658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 284614 - 284568
Alignment:
Q  216 ttaatactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  284614 ttaatactccctccgtttcataatacttgtccattttagagaataat 284568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 24771903 - 24771948
Alignment:
Q  217 taatactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  24771903 taatactccctccgtttcataatacttgtccattttagagaataat 24771948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 40783655 - 40783699
Alignment:
Q  218 aatactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  40783655 aatactccctccgtttcataatacttgtccattttagagaataat 40783699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 23045279 - 23045321
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  23045279 tactccctccgtttcataatacttgtccattttagagaataat 23045321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 33083024 - 33082979
Alignment:
Q  217 taatactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||    
T  33083024 taatactccctccgtttcataatacttgtccattttaaagaataat 33082979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 321903 - 321863
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaata 260  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  321903 tactccctccgtttcataatacttgtccattttagagaata 321863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 23526517 - 23526474
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||| |||||||||||  ||||||||    
T  23526517 atactccctccgtttcataatacttgtccattttgaagaataat 23526474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 47037852 - 47037894
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| ||||| |||||| ||||||||    
T  47037852 tactccctccgtttcataatacttgtctattttaaagaataat 47037894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 41959853 - 41959812
Alignment:
Q  217 taatactccctccgtttcataataattgtccattttagagaa 258  Q
    ||||||||||||||||||| ||||  ||||||||||||||||    
T  41959853 taatactccctccgtttcaaaatacatgtccattttagagaa 41959812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 25614352 - 25614395
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25614352 atactccctccgtttcataataattgtccattttagagaataat 25614395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 27814089 - 27814046
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  27814089 atactccctccgtttcataatacttgtccattttagagaataat 27814046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 40349239 - 40349196
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  40349239 atactccctccgtttcataatacttgtccattttagagaataat 40349196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 36453122 - 36453166
Alignment:
Q  218 aatactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||    
T  36453122 aatactctctccgtttcataatacttgtccattttagagaataat 36453166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 10981785 - 10981743
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||| |||||||||| |||||||||||||||||||||    
T  10981785 tactccctccatttcataatatttgtccattttagagaataat 10981743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 47110729 - 47110685
Alignment:
Q  218 aatactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||||| || | ||||||||||||||||    
T  47110729 aatactccctccgtttcataatacttattcattttagagaataat 47110685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 43275391 - 43275441
Alignment:
Q  212 ttaattaatactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  43275391 ttaaataatactccctccgtttcataatacttgtccattttagagaataat 43275441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 11646323 - 11646367
Alignment:
Q  218 aatactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  11646323 aatactccctccgtttcataatacttgtccattttagagaataat 11646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 30999522 - 30999566
Alignment:
Q  218 aatactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  30999522 aatactccctccgtttcataatacttgtccattttagagaataat 30999566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 36068358 - 36068315
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  36068358 atactccctccgtttcataatacttgtccattttagagaataat 36068315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 7147190 - 7147148
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  7147190 tactccctccgtttcataatacttgtccattttagagaataat 7147148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 40058303 - 40058345
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  40058303 tactccctccgtttcataatacttgtccattttagagaataat 40058345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 40918731 - 40918773
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  40918731 tactccctccgtttcataatacttgtccattttagagaataat 40918773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 3585735 - 3585686
Alignment:
Q  213 taattaatactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||| |||||||||||||| ||||| |||||||||||||||    
T  3585735 taattaatactccatccgtttcataatacttgtctattttagagaataat 3585686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 37345848 - 37345806
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||| |||||||||||||| |||||||||||||||||||||    
T  37345848 tactccttccgtttcataatacttgtccattttagagaataat 37345806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 2539927 - 2539972
Alignment:
Q  217 taatactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||||    
T  2539927 taatactccttccgtttcataatacttgtccattttaaagaataat 2539972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 11174221 - 11174265
Alignment:
Q  218 aatactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||||| |||| ||||||| ||||||||    
T  11174221 aatactccctccgtttcataatacttgttcattttaaagaataat 11174265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 8626763 - 8626717
Alignment:
Q  216 ttaatactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  8626763 ttaatactccctccgtttcataatacttgtccattttagagaataat 8626717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 1605857 - 1605813
Alignment:
Q  218 aatactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  1605857 aatactccctccgtttcataatacttgtccattttagagaataat 1605813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 7761577 - 7761535
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  7761577 tactccctccgtttcataatacttgtccattttagagaataat 7761535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 29260469 - 29260427
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  29260469 tactccctccgtttcataatacttgtccattttagagaataat 29260427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 15064693 - 15064737
Alignment:
Q  218 aatactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||    
T  15064693 aatactccctccgtttcataatacttgtccattttggagaataat 15064737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 13757485 - 13757442
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||| |||||||||||||| |||||||||||||||||||||    
T  13757485 atactccatccgtttcataatacttgtccattttagagaataat 13757442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 17942721 - 17942678
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||| ||||||||||| |||||||||    
T  17942721 atactccctccgtttcataatacttgtccattttggagaataat 17942678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 4129703 - 4129661
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  4129703 tactccctccgtttcataatacttgtccattttagaaaataat 4129661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 31559738 - 31559780
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| || ||||||||||||||||||    
T  31559738 tactccctccgtttcataatacttctccattttagagaataat 31559780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 15064973 - 15064933
Alignment:
Q  218 aatactccctccgtttcataataattgtccattttagagaa 258  Q
    |||||||||||||||||| ||||  ||||||||||||||||    
T  15064973 aatactccctccgtttcaaaatacatgtccattttagagaa 15064933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 23367069 - 23367024
Alignment:
Q  217 taatactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  23367069 taatactccctccgtttcataatacttgtccattttagagaataat 23367024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 22388137 - 22388180
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  22388137 atactccctccgtttcataatacttgtccattttagagaataat 22388180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 39938451 - 39938405
Alignment:
Q  216 ttaatactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||    
T  39938451 ttaatactccctccgttttataatacttgtccattttagagaataat 39938405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 1102781 - 1102736
Alignment:
Q  217 taatactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||    
T  1102781 taatactccctccgtttcataatacttgtccatttgagagaataat 1102736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 3519191 - 3519142
Alignment:
Q  213 taattaatactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  3519191 taataaatacttcctccgtttcataatacttgtccattttagagaataat 3519142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 1646569 - 1646522
Alignment:
Q  215 attaatactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||| |||||||||||||||||||||  ||||||||||||||||||||    
T  1646569 attactactccctccgtttcataatacctgtccattttagagaataat 1646522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 40756902 - 40756953
Alignment:
Q  211 attaattaatactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||| ||| ||||||||||||||||||||| ||||||||||| |||||||||    
T  40756902 attacttactactccctccgtttcataatacttgtccattttggagaataat 40756953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 12969740 - 12969782
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| ||||||||||| |||||||||    
T  12969740 tactccctccgtttcataatacttgtccattttggagaataat 12969782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 37673743 - 37673784
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataa 261  Q
    |||||| |||||||||||||| ||||||||||||||||||||    
T  37673743 tactccttccgtttcataatacttgtccattttagagaataa 37673784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 12806851 - 12806895
Alignment:
Q  218 aatactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  12806851 aatactccctccgtttcataatacttgtccattttagagaataat 12806895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 30720491 - 30720534
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  30720491 atactccctccgtttcataatacttgtccattttagagaataat 30720534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 36561090 - 36561141
Alignment:
Q  211 attaattaatactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||| ||| ||||||||||||||||||||| |||||||||||||||||||||    
T  36561090 attagttagtactccctccgtttcataatacttgtccattttagagaataat 36561141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 40886610 - 40886652
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  40886610 tactccctccgtttcataatacttgtccattttagagaataat 40886652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 25683229 - 25683271
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| ||||||||||| |||||||||    
T  25683229 tactccctccgtttcataatacttgtccattttggagaataat 25683271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 261
Target Start/End: Complemental strand, 25773927 - 25773885
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataa 261  Q
    |||||| ||||||||||||||| ||||||||||||||||||||    
T  25773927 atactctctccgtttcataatacttgtccattttagagaataa 25773885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 10285057 - 10285100
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||| ||||| |||||| ||||||||    
T  10285057 atactccctccgtttcataatacttgtctattttaaagaataat 10285100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 23097723 - 23097766
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||| |||||||||||||| ||||||||||| |||||||||    
T  23097723 atactccttccgtttcataatacttgtccattttggagaataat 23097766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 11319837 - 11319791
Alignment:
Q  216 ttaatactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||| | |||||||||||||| ||||| |||||||||||||||    
T  11319837 ttaatacttcatccgtttcataatacttgtctattttagagaataat 11319791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 25704930 - 25704886
Alignment:
Q  218 aatactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  25704930 aatactccctccgtttcataatacttgtccattttagagaataat 25704886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 44569116 - 44569072
Alignment:
Q  218 aatactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  44569116 aatactccctccgtttcataatacttgtccattttagagaataat 44569072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 14261322 - 14261279
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  14261322 atactccctccgtttcataatacttgtccattttagagaataat 14261279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 21310699 - 21310656
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  21310699 atactccctccgtttcataatacttgtccattttagagaataat 21310656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 24706246 - 24706289
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  24706246 atactccctccgtttcataatacttgtccattttagagaataat 24706289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 12071837 - 12071795
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  12071837 tactccctccgtttcataatacttgtccattttagagaataat 12071795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 21661537 - 21661577
Alignment:
Q  222 ctccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  21661537 ctccctccgtttcataatacttgtccattttagagaataat 21661577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 21670301 - 21670341
Alignment:
Q  222 ctccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  21670301 ctccctccgtttcataatacttgtccattttagagaataat 21670341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 22321266 - 22321310
Alignment:
Q  218 aatactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  22321266 aatactccctccgtttcataatacttgtctattttagagaataat 22321310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 40122487 - 40122529
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||| ||||||||||||||| |||||||||||||||||||||    
T  40122487 tactctctccgtttcataatacttgtccattttagagaataat 40122529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 20249011 - 20249056
Alignment:
Q  217 taatactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||| ||||||||||||||| ||||||||||| |||||||||    
T  20249011 taatactcactccgtttcataatacttgtccattttggagaataat 20249056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 21065037 - 21064996
Alignment:
Q  221 actccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||| |||| ||||||||||||||||    
T  21065037 actccctccgtttcataatacttgttcattttagagaataat 21064996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 39295455 - 39295418
Alignment:
Q  218 aatactccctccgtttcataataattgtccattttaga 255  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  39295455 aatactccttccgtttcataatacttgtccattttaga 39295418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 50768129 - 50768097
Alignment:
Q  230 gtttcataataattgtccattttagagaataat 262  Q
    ||||||||||| |||||||||||||||||||||    
T  50768129 gtttcataatacttgtccattttagagaataat 50768097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 19241667 - 19241710
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  19241667 atactccctccgtttcataatacttgtccattttagagaataat 19241710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 29375410 - 29375367
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  29375410 atactccctccgtttcataatacttgtccattttagagaataat 29375367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 36881558 - 36881515
Alignment:
Q  219 atactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  36881558 atactccctccgtttcataatacttgtccattttagagaataat 36881515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 13365120 - 13365078
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  13365120 tactccctccgtttcataatacttgtccattttagagaataat 13365078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 46694110 - 46694152
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  46694110 tactccctccgtttcataatacttgtccattttagagaataat 46694152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 32834989 - 32835031
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| ||||||||| |||||||||||    
T  32834989 tactccctccgtttcataatacttgtccattgtagagaataat 32835031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 199132 - 199090
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||||||| |||||||||| |||||||||||||| ||||||    
T  199132 tactccctccatttcataatagttgtccattttagaaaataat 199090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 19912217 - 19912177
Alignment:
Q  218 aatactccctccgtttcataataattgtccattttagagaa 258  Q
    |||||||||||||||||| ||||  ||||||||||||||||    
T  19912217 aatactccctccgtttcaaaatacatgtccattttagagaa 19912177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 38806384 - 38806344
Alignment:
Q  218 aatactccctccgtttcataataattgtccattttagagaa 258  Q
    |||||||||||||||||| ||||  ||||||||||||||||    
T  38806384 aatactccctccgtttcaaaatacatgtccattttagagaa 38806344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 48820619 - 48820575
Alignment:
Q  218 aatactccctccgtttcataataattgtccattttagagaataat 262  Q
    |||||| |||||||||||||||| |||||||||||| | ||||||    
T  48820619 aatacttcctccgtttcataatacttgtccattttaaaaaataat 48820575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 45730 - 45688
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  45730 tactccctccgtttcataatacttgtccattttagagaataat 45688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 438 - 396
Alignment:
Q  220 tactccctccgtttcataataattgtccattttagagaataat 262  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  438 tactccctccgtttcataatacttgtccattttagaaaataat 396  T

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