View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0779_low_1 (Length: 588)
Name: NF0779_low_1
Description: NF0779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0779_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 199 - 531
Target Start/End: Original strand, 7258005 - 7258337
Alignment:
| Q |
199 |
aatgaaatcaacttactactccaagttgttctgatgctttggccttccaaagtctgaggttagtatcatcacttcctgaaataacataacttccatcgcc |
298 |
Q |
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| T |
7258005 |
aatgaaatcaacttactactccaagttgttctgatgctttggccttccaaagtctgaggttagtatcatcacttcctgaaataacataacttccatcgcc |
7258104 |
T |
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| Q |
299 |
actgaacttgacacagaataccctgtgaacaaaagaagaagattagctgccatagagcaagataagaatatttccataaactcgacacaaacagcaaaag |
398 |
Q |
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| T |
7258105 |
actgaacttgacacagaataccctgtgaacaaaagaagaagattagctgccatagagcaagataagaatatttccataaactcgacacaaacagcaaaag |
7258204 |
T |
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| Q |
399 |
aaatcttttaaacagctgaggtatgtatcgttcgaaaagttaagcggacaattaaacacaacagaatgttcagtgcacaatatgtatattgagtgaacct |
498 |
Q |
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| T |
7258205 |
aaatcttttaaacagctgaggtatgtatcgttcgaaaagttaagcggacaattaaacacaacagaatgttcagtgcacaatatgtatattgagtgaacct |
7258304 |
T |
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| Q |
499 |
ttgcattcttttagtatgataaatctctctgct |
531 |
Q |
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| T |
7258305 |
ttgcattcttttagtatgataaatctctctgct |
7258337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 7257902 - 7257961
Alignment:
| Q |
90 |
tcacagttataatagaatttcaatcttagtacaacatgaaccacaattaatagatgacag |
149 |
Q |
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| T |
7257902 |
tcacagttataatagaatttcaatcttagtacaacatgaaccacaattaatagatgacag |
7257961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 7257800 - 7257862
Alignment:
| Q |
22 |
catcatcataaacaggtgaatctcggaatgaattgaagggcctctcagaagagaaattattaa |
84 |
Q |
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| T |
7257800 |
catcatcataaacaggtgaatctcggaatgaactgaagggcctctcagaagagaaattattaa |
7257862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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