View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0779_low_11 (Length: 347)
Name: NF0779_low_11
Description: NF0779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0779_low_11 |
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| [»] scaffold1152 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 77 - 318
Target Start/End: Original strand, 34199586 - 34199830
Alignment:
| Q |
77 |
agagagtgtgagagaatgggaactcgtcgtagaaggagaagcgaagaagaagaatcagcttcttctgacggtgaagatggcggcgc---catcaccgaaa |
173 |
Q |
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| T |
34199586 |
agagagtgtgagagaatgggaactcgtcgtagaaggagaagcgaagaagaagaatcagcttcttctgacggtgaagatggcggcgcagccaccaccgaaa |
34199685 |
T |
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| Q |
174 |
ccaaaacggagaaaactaacggtgacgaaggtgttgtcgtttcaggttcatcatcgcattacgaacggattagggaacaaaggatgaaagagaacgctga |
273 |
Q |
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| T |
34199686 |
ccaaaacggagaaaactaacggtgacgaaggtgttgtcgtttcaggttcatcatcgcattacgaacggattagggaacaaaggatggaagagaacgctga |
34199785 |
T |
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| Q |
274 |
gagaatgcataagcttggtttgttaaagctttcttgtaacctcaa |
318 |
Q |
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| T |
34199786 |
gagaatgcataagcttggtttgttaaagctttctggtaacctcaa |
34199830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1152 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: scaffold1152
Description:
Target: scaffold1152; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 74 - 318
Target Start/End: Original strand, 1772 - 2016
Alignment:
| Q |
74 |
cagagagagtgtgagagaatgggaactcgtcgtagaaggagaagcgaagaagaagaatcagcttcttctgacggtgaagatggcggc---gccatcaccg |
170 |
Q |
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| T |
1772 |
cagagagagtgtgtgagaatgggaactcgtcgtcgaaggagaaccgaagaagaa---tcaacttcttctaaccgtgaagatggcagcccagccaccaccg |
1868 |
T |
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| Q |
171 |
aaaccaaaacggagaaaactaacggtgacgaaggtgttgtcgtttcaggttcatcatcgcattacgaacggattagggaacaaaggatgaaagagaacgc |
270 |
Q |
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| T |
1869 |
aaaccaaaacggcgaaaactgacggtgacaaaggtgttgtagttttgggttcatcatcatattacgaatagattagggaacaaaggatgaaagagaacgc |
1968 |
T |
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| Q |
271 |
tgagagaatgcataagcttggtttgttaaagctttcttgtaacctcaa |
318 |
Q |
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| T |
1969 |
tgagagaatgcataagcttggattgttaaagctttctggtaacctcaa |
2016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 77 - 250
Target Start/End: Original strand, 40812075 - 40812248
Alignment:
| Q |
77 |
agagagtgtgagagaatgggaactcgtcgtagaaggagaagcgaagaagaagaatcagcttcttctgacggtgaagatggcggcgccatcacc---gaaa |
173 |
Q |
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| T |
40812075 |
agagagtgtgtgagaatgggaactcgtcgtcgaaggagaaccgaagaagaa---tcagcttcttctgacggtgaagatggcagcgcaaccaccaacgaaa |
40812171 |
T |
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| Q |
174 |
ccaaaacggagaaaactaacggtgacgaaggtgttgtcgtttcaggttcatcatcgcattacgaacggattagggaa |
250 |
Q |
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||||||||| ||||||| |||||||||||||||||| |||||| ||||||||||| |||||||||| |||||||||| |
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| T |
40812172 |
ccaaaacggcgaaaactgacggtgacgaaggtgttgccgtttctggttcatcatcacattacgaacagattagggaa |
40812248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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