View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0779_low_18 (Length: 278)
Name: NF0779_low_18
Description: NF0779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0779_low_18 |
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| [»] scaffold0303 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 28860094 - 28859865
Alignment:
| Q |
1 |
cggcccttgtccacacttgaatcgcaaagggacatgaaaagaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttggacaatg |
100 |
Q |
| |
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||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28860094 |
cggcccttgtccatacttgaatcgcaaaggggcatgaaaagaataggtgagcaaaatcttcctgactagaattgcaatttacacagtcagttggacaatg |
28859995 |
T |
|
| Q |
101 |
aacccctttatcatgtagtctaattcgggtgggcaaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaatt |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28859994 |
aacccctttatcatgtagtctaatccgggtgggcaaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaatt |
28859895 |
T |
|
| Q |
201 |
ccagaccaatttcccggcctgtgatgatgt |
230 |
Q |
| |
|
||||||||||||||| ||||| || ||||| |
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|
| T |
28859894 |
ccagaccaatttccccgcctgcgaagatgt |
28859865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 18119245 - 18119016
Alignment:
| Q |
1 |
cggcccttgtccacacttgaatcgcaaagggacatgaaaagaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttggacaatg |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
18119245 |
cggcccttgtccatacttgaatcgcaaagggaaatgaaaagaacaggtgagcaaaatctttctgaccagaattgcaatttacacagtcagttggacaacg |
18119146 |
T |
|
| Q |
101 |
aacccctttatcatgtagtctaattcgggtgggcaaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaatt |
200 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18119145 |
aacccctttataatgtagtctaatccgggtgggcaaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttaagtctccaaatt |
18119046 |
T |
|
| Q |
201 |
ccagaccaatttcccggcctgtgatgatgt |
230 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |
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| T |
18119045 |
ccagaccaatttcccggcccgtgaagatgt |
18119016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 10770521 - 10770292
Alignment:
| Q |
1 |
cggcccttgtccacacttgaatcgcaaagggacatgaaaagaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttggacaatg |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
10770521 |
cggcccttgtccatacttgaatcgcaaagggacatgaaaagaacagatgagcaaaatcttcctgaccaaaattgcaatttacacagtcagttggacaatg |
10770422 |
T |
|
| Q |
101 |
aacccctttatcatgtagtctaattcgggtgggcaaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
10770421 |
aacccctttatcatgtagtctaatccgggtgggcgaaaaacctcgacacatatgccaaaccaagttcttcacttttggtggaactttgagtctccaaatt |
10770322 |
T |
|
| Q |
201 |
ccagaccaatttcccggcctgtgatgatgt |
230 |
Q |
| |
|
||||||||||| |||| |||| || ||||| |
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| T |
10770321 |
ccagaccaattgcccgacctgcgaagatgt |
10770292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 13501 - 13272
Alignment:
| Q |
1 |
cggcccttgtccacacttgaatcgcaaagggacatgaaaagaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttggacaatg |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13501 |
cggcccttgtccatacttgaatcgcaaagggatatgaaaagaacaggtgagcaaaatcttcctgaccagaatttcaatttacacagtcagttggacaatg |
13402 |
T |
|
| Q |
101 |
aacccctttatcatgtagtctaattcgggtgggcaaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13401 |
aacccctttatcatgtagtctaatccgggtgggcaaaacacattgacacatacgccaaaccaagttcttcacttttggtgggactttgaatctccaaatt |
13302 |
T |
|
| Q |
201 |
ccagaccaatttcccggcctgtgatgatgt |
230 |
Q |
| |
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| ||||||||||||||||||| || ||||| |
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| T |
13301 |
ctagaccaatttcccggcctgcgaagatgt |
13272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 17753089 - 17753318
Alignment:
| Q |
1 |
cggcccttgtccacacttgaatcgcaaagggacatgaaaagaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttggacaatg |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
17753089 |
cggcccttgtccatacttgaatcgcaaaggtacatgaaaagaacaggtgagcaaaatcatcctgaccagaattccaatttacacagtcagttggacaatg |
17753188 |
T |
|
| Q |
101 |
aacccctttatcatgtagtctaattcgggtgggcaaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaatt |
200 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17753189 |
aacccctttatcatgtggtctaatctgggtgggcaaaacacctcgacacatacgccaaaccaagtttttcacttttggtgggactttgagtctccaaatt |
17753288 |
T |
|
| Q |
201 |
ccagaccaatttcccggcctgtgatgatgt |
230 |
Q |
| |
|
||| ||||||||| |||||||||| ||||| |
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|
| T |
17753289 |
ccaaaccaatttctcggcctgtgaagatgt |
17753318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 22738653 - 22738784
Alignment:
| Q |
91 |
ttggacaatgaacccctttatcatgtagtctaattcgggtgggcaaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgag |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22738653 |
ttggacaatgaacccctttatcatgtagtctaatccgggtgggcaaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgag |
22738752 |
T |
|
| Q |
191 |
tctccaaattccagaccaatttcccggcctgt |
222 |
Q |
| |
|
||||||||||||||||||||| || ||||||| |
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|
| T |
22738753 |
tctccaaattccagaccaattgcctggcctgt |
22738784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 22737293 - 22737387
Alignment:
| Q |
1 |
cggcccttgtccacacttgaatcgcaaagggacatgaaaagaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttgga |
95 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
22737293 |
cggcccttgtccatagttgaatcgcaaagggacatgaaaagaacagatgagcaaactcttctcgaccagaatagcaatttacacagtcagttgga |
22737387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 27492566 - 27492349
Alignment:
| Q |
2 |
ggcccttgtccacacttgaatcgcaaagggacatgaaaagaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttggacaatga |
101 |
Q |
| |
|
|||||||| || |||||| ||||||| ||||| | ||| || || || ||||| ||||| || || |||| ||||| ||| ||||||||||||| ||| |
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|
| T |
27492566 |
ggcccttgctcatacttgactcgcaaaaggacaagcaaaaaaaagatgggcaaagtcttcttggccggaatcacaattaacatagtcagttggacattga |
27492467 |
T |
|
| Q |
102 |
acccctttatcatgtagtctaattcgggtgggcaaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattc |
201 |
Q |
| |
|
|||| ||||||||| ||| ||| | || |||||| || |||||||| |||||||||||||||||||| || ||||||||||| |||||||||||| |
|
|
| T |
27492466 |
accc-tttatcatgaagtgtaacccaagttggcaaacaactccgacacattcgccaaaccaagttcttcaccttgggtgggactttaagtctccaaattt |
27492368 |
T |
|
| Q |
202 |
cagaccaatttcccggcct |
220 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
27492367 |
cagaccaatagcccggcct |
27492349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 27457332 - 27457259
Alignment:
| Q |
144 |
cgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaatttcccgg |
217 |
Q |
| |
|
||||| || ||||| |||||||| || ||||||||||||||||| ||| ||||||| || ||||| | |||||| |
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|
| T |
27457332 |
cgacaaattcgccataccaagtttttgacttttggtgggactttaagtttccaaatccccgaccagtatcccgg |
27457259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 20247390 - 20247325
Alignment:
| Q |
144 |
cgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaa |
209 |
Q |
| |
|
|||||||| ||||||| ||| ||||| ||||| ||||| ||||| ||||||||||| |||||||| |
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|
| T |
20247390 |
cgacacattcgccaaatcaaattctttactttaggtggaactttcagtctccaaataacagaccaa |
20247325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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