View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0779_low_20 (Length: 260)

Name: NF0779_low_20
Description: NF0779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0779_low_20
NF0779_low_20
[»] chr5 (2 HSPs)
chr5 (22-260)||(24505963-24506201)
chr5 (28-121)||(23331286-23331379)
[»] chr1 (1 HSPs)
chr1 (25-126)||(20066962-20067063)
[»] chr8 (2 HSPs)
chr8 (22-121)||(23705950-23706049)
chr8 (209-258)||(23705815-23705864)
[»] chr3 (3 HSPs)
chr3 (22-121)||(3814477-3814576)
chr3 (209-258)||(3814339-3814388)
chr3 (22-125)||(20596910-20597013)
[»] chr6 (1 HSPs)
chr6 (31-125)||(8697920-8698014)
[»] chr7 (1 HSPs)
chr7 (28-121)||(29287-29380)
[»] chr4 (2 HSPs)
chr4 (31-121)||(37102306-37102396)
chr4 (28-121)||(20622903-20622996)
[»] chr2 (2 HSPs)
chr2 (79-121)||(42732953-42732995)
chr2 (28-121)||(43016939-43017032)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 24505963 - 24506201
Alignment:
Q  22 aaggattcatggaaatggtttttggagcttctaattgctgaattaggtggaaccaggttgtgcaagacatacacctttatcagtgatcaacaaaaggtaa 121  Q
    ||||| || ||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  24505963 aaggagtcgtggaagtggtttttggagcttctgattgctgacttaggtggaagcaggttgtgcaagacatacacctttattagtgatcaacaaaaggtaa 24506062  T
Q  122 ttttctgttaaaaaatgtctgatgtttatacaatttattgtttccttaaaacacattttatgttataaactcaatttgtagggtcttttgcctgctatgg 221  Q
    |||||| || |||||||||||||||||||||| ||| ||||||| |||||||  |||||||| | |||||||||||||||||||||||||||||| ||||    
T  24506063 ttttctatttaaaaatgtctgatgtttatacattttgttgtttcgttaaaactgattttatgctgtaaactcaatttgtagggtcttttgcctgccatgg 24506162  T
Q  222 atgaactacttccagatgtagagcagagattttgtgtta 260  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  24506163 atgaactacttccaggtgtagagcagagattttgtgtta 24506201  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 23331286 - 23331379
Alignment:
Q  28 tcatggaaatggtttttggagcttctaattgctgaattaggtggaaccaggttgtgcaagacatacacctttatcagtgatcaacaaaaggtaa 121  Q
    ||||||||||||||||||||||| || |||||||| ||||||||    || ||||||  ||| ||||| ||||| |||||||||||||||||||    
T  23331286 tcatggaaatggtttttggagctacttattgctgatttaggtggtcatagattgtgcttgacttacacttttataagtgatcaacaaaaggtaa 23331379  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 20066962 - 20067063
Alignment:
Q  25 gattcatggaaatggtttttggagcttctaattgctgaattaggtggaaccaggttgtgcaagacatacacctttatcagtgatcaacaaaaggtaattt 124  Q
    ||||||||||||||||||||||| ||||| ||   |||  ||||||| || ||||| |||||||||||||||||||||||||||||| ||||||||| ||    
T  20066962 gattcatggaaatggtttttggaacttctcatcaatgatctaggtgggacaaggttatgcaagacatacacctttatcagtgatcaataaaaggtaaatt 20067061  T
Q  125 tc 126  Q
    ||    
T  20067062 tc 20067063  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 23706049 - 23705950
Alignment:
Q  22 aaggattcatggaaatggtttttggagcttctaattgctgaattaggtggaaccaggttgtgcaagacatacacctttatcagtgatcaacaaaaggtaa 121  Q
    ||||| |||||||| ||||||||||| || || |||| ||| ||||||||||| || || |||||||| ||||| ||||| |||||||||||||||||||    
T  23706049 aaggaatcatggaagtggtttttggaactcctgattggtgacttaggtggaactagattatgcaagacttacacatttattagtgatcaacaaaaggtaa 23705950  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 23705864 - 23705815
Alignment:
Q  209 ttgcctgctatggatgaactacttccagatgtagagcagagattttgtgt 258  Q
    ||||||||||||||||||||||| || |||||||| || |||||||||||    
T  23705864 ttgcctgctatggatgaactactaccggatgtagaacaaagattttgtgt 23705815  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 3814576 - 3814477
Alignment:
Q  22 aaggattcatggaaatggtttttggagcttctaattgctgaattaggtggaaccaggttgtgcaagacatacacctttatcagtgatcaacaaaaggtaa 121  Q
    ||||| |||||||| ||||||||||| ||  | |||| ||| ||||||||| |||| || |||||||| |||||||| || |||||||||||||||||||    
T  3814576 aaggaatcatggaagtggtttttggaactcttgattggtgacttaggtggacccagattatgcaagacttacaccttcattagtgatcaacaaaaggtaa 3814477  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 3814388 - 3814339
Alignment:
Q  209 ttgcctgctatggatgaactacttccagatgtagagcagagattttgtgt 258  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||    
T  3814388 ttgcctgctatggatgaactacttccagatgtagaccaaagattttgtgt 3814339  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 20596910 - 20597013
Alignment:
Q  22 aaggattcatggaaatggtttttggagcttctaattgctgaattaggtggaaccaggttgtgcaagacatacacctttatcagtgatcaacaaaaggtaa 121  Q
    ||||| || ||||| ||||| |||||||| ||||||||||| ||||||||| | ||  | || ||||| ||||| ||||| ||||| ||||||||||||     
T  20596910 aaggaatcttggaattggttcttggagctactaattgctgatttaggtggaccaagactatgtaagacttacacttttattagtgaccaacaaaaggtag 20597009  T
Q  122 tttt 125  Q
    ||||    
T  20597010 tttt 20597013  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 8697920 - 8698014
Alignment:
Q  31 tggaaatggtttttggagcttctaattgctgaattaggtggaaccaggttgtgcaagacatacacctttatcagtgatcaacaaaaggtaatttt 125  Q
    ||||| ||||| |||||||||||||||| ||| ||||||||| | || ||||| ||||| ||||| ||||| ||||| || ||||||||| ||||    
T  8697920 tggaagtggttcttggagcttctaattggtgatttaggtggaccaagattgtgtaagacttacacttttattagtgaccagcaaaaggtagtttt 8698014  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 29380 - 29287
Alignment:
Q  28 tcatggaaatggtttttggagcttctaattgctgaattaggtggaaccaggttgtgcaagacatacacctttatcagtgatcaacaaaaggtaa 121  Q
    |||||||| ||||||||||| || || ||   |||  |||||||||| ||||| |||||||| |||||||||||||||||||||  ||||||||    
T  29380 tcatggaattggtttttggaactccttatcaatgacctaggtggaacaaggttatgcaagacttacacctttatcagtgatcaatgaaaggtaa 29287  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 37102396 - 37102306
Alignment:
Q  31 tggaaatggtttttggagcttctaattgctgaattaggtggaaccaggttgtgcaagacatacacctttatcagtgatcaacaaaaggtaa 121  Q
    |||||||||||||||||||  || |||||||| ||||||||| |  | ||||||  ||| ||||| ||||| ||||| |||||||||||||    
T  37102396 tggaaatggtttttggagcagctcattgctgacttaggtggacctggattgtgcttgacttacacttttattagtgaccaacaaaaggtaa 37102306  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 20622903 - 20622996
Alignment:
Q  28 tcatggaaatggtttttggagcttctaattgctgaattaggtggaaccaggttgtgcaagacatacacctttatcagtgatcaacaaaaggtaa 121  Q
    ||||| |||||||||||||| || || ||||||||  |||||||  | || ||||||  ||| ||||| ||||| |||||||||||||||||||    
T  20622903 tcatgaaaatggtttttggaactactcattgctgatctaggtggtcctagattgtgcttgacttacacttttataagtgatcaacaaaaggtaa 20622996  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 42732995 - 42732953
Alignment:
Q  79 ttgtgcaagacatacacctttatcagtgatcaacaaaaggtaa 121  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||    
T  42732995 ttgtgtaagacatacacttttataagtgatcaacaaaaggtaa 42732953  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 43016939 - 43017032
Alignment:
Q  28 tcatggaaatggtttttggagcttctaattgctgaattaggtggaaccaggttgtgcaagacatacacctttatcagtgatcaacaaaaggtaa 121  Q
    |||||| ||||||||||||||||||| || ||||| || ||||| |||||  ||||||| || || ||  | || ||||||||| |||||||||    
T  43016939 tcatgggaatggtttttggagcttctcatagctgatttgggtggcaccagactgtgcaaaacttatactataataagtgatcaaaaaaaggtaa 43017032  T

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