View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0779_low_23 (Length: 238)
Name: NF0779_low_23
Description: NF0779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0779_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 53901639 - 53901798
Alignment:
| Q |
77 |
aacatgctattcttacccttcaaatcatcattaccactaccaacattgctttgtaatggaaacctaaatgaaacagctcttctagatgaatcagttacat |
176 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53901639 |
aacatgccattcttacccttcaaatcatcattaccactaccaacattgctttgtaatggaaacctaaatgaaacagctcttctagatgaatcagttacat |
53901738 |
T |
|
| Q |
177 |
caccatttttcttatcnnnnnnncctctaagccaaatctttgatatagaaaaactctcct |
236 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53901739 |
caccatttttcttatctttttttcctctaagccaaatctttgatatagaaaaactctcct |
53901798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 77 - 236
Target Start/End: Complemental strand, 3958844 - 3958685
Alignment:
| Q |
77 |
aacatgctattcttacccttcaaatcatcattaccactaccaacattgctttgtaatggaaacctaaatgaaacagctcttctagatgaatcagttacat |
176 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| |
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| T |
3958844 |
aacatgccattcttacccttcaaatcatcattaccactaccaacattgctttgtaatggaaacctgaatgaaacagcccttctagatgaatcagccacat |
3958745 |
T |
|
| Q |
177 |
caccatttttcttatcnnnnnnncctctaagccaaatctttgatatagaaaaactctcct |
236 |
Q |
| |
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|||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |
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| T |
3958744 |
caccatttttcttatcttttttccctctgagcctaatctttgatatagaaaaactctcct |
3958685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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