View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0779_low_3 (Length: 492)
Name: NF0779_low_3
Description: NF0779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0779_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 114 - 435
Target Start/End: Complemental strand, 50357116 - 50356795
Alignment:
| Q |
114 |
cacaatcattttcgattttt-ctttaaaaacactgcctttcttatgactaggaaagggaagtctttacaaaaaatacagtattcctattaaagtgacgcg |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||| |
|
|
| T |
50357116 |
cacaatcattttcgattttttctttaaaaacactgcctttcttatgactaggaaagggaagtctttacaaaaa-tacggtaatcctattaaagtgacgcg |
50357018 |
T |
|
| Q |
213 |
ttgaattgaatttgatttttacttcttctttttgacaatatggaagtaatagattttctagataatcattctttatgaaattcaacgctgagaaagttag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50357017 |
ttgaattgaatttgatttttacttcttctttttgacaatatggaagtaatagattttctagataatcattctttatgaaattcaacgctgagaaagttag |
50356918 |
T |
|
| Q |
313 |
aacccgaggatgctttttggacccacttcaaagttcaacaccccacaaaatcgtatcagattaatctccaccctttgatcaagtagaataaaaggaaatt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50356917 |
aacccgaggatgctttttggacccacttcaaagttcaacaccccacaaaatcgtatcagattaatctccaccctttgatcaagtagaataaaaggaaatt |
50356818 |
T |
|
| Q |
413 |
aaaaaactcattgactaactttt |
435 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
50356817 |
aaaaaactcattgactaactttt |
50356795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 50357200 - 50357146
Alignment:
| Q |
29 |
ataaacaagagcaaagagagtcatcaagaagaattacaatatgattcaatgctgtc |
84 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
50357200 |
ataaacaagagcaaagagagttatcaagaagaattacaatatga-tcaatgctgtc |
50357146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 50359446 - 50359401
Alignment:
| Q |
114 |
cacaatcattttcgatttttctttaaaaacactgcctttcttatga |
159 |
Q |
| |
|
|||| |||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
50359446 |
cacagtcattttcgatttttcattaaaaatactgcctttcttatga |
50359401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 50357773 - 50357721
Alignment:
| Q |
114 |
cacaatcattttcgatttttctttaaaaacactgcctttcttatgactaggaa |
166 |
Q |
| |
|
||||||| ||||||||| ||||||||||| ||| ||||| |||||||| |||| |
|
|
| T |
50357773 |
cacaatcgttttcgattattctttaaaaatacttccttttttatgacttggaa |
50357721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1049 times since January 2019
Visitors: 5824