View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0779_low_6 (Length: 482)
Name: NF0779_low_6
Description: NF0779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0779_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 1885872 - 1886251
Alignment:
| Q |
1 |
ggcaaaatcgcccaatgttggcagctgctgggtctttgttaagacataactgttgcgattttgaatccaggtgatatctcctctattatttttgcaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1885872 |
ggcaaaatcgcccaatgttggcagctgctgggtctttgttaagacataactgttgcgattttgaatccaggtgatatctcctctat-atttttgcaattc |
1885970 |
T |
|
| Q |
101 |
tgcatcgtttagagccctcacaacagccaatctttagcacgctgatgtggatcatttgaaaaaatagaaataatatggaatgatacctcagacaagtgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1885971 |
tgcatcgtttagagccctcacaacagccaatctttagcacgctgatgtggatcatttgaaaaaatagaaataatatggaatgatacctcagacaagtgtc |
1886070 |
T |
|
| Q |
201 |
aggttatctgtgatagagccacgatgttgttttcaagttggaagaatgctcaggaggtaaaacaaacatcaagtgtatctcatgcggtcaggcacgttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1886071 |
aggttatctgtgatagagccacgatgttgttttcaagttggaagaatgctcaggaggtaaaacaaacatcaagtgtatctcatgcggtcaggcacgttga |
1886170 |
T |
|
| Q |
301 |
gaaatgggttaaacaatctcaggcaggtacaagtgtaatgttgacgcttcctgtctgaagctctggatagagtgggcataa |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1886171 |
gaaatgggttaaacaatctcaggcaggtacaagtgtaatgttgacgcttcctgtctgaagctctggatagagtgggcataa |
1886251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 36256769 - 36256820
Alignment:
| Q |
124 |
cagccaatctttagcacgctgatgtggatcatttgaaaaaatagaaataata |
175 |
Q |
| |
|
||||||||||||||||| || |||| || |||||| |||||||||||||||| |
|
|
| T |
36256769 |
cagccaatctttagcacacttatgttgagcatttggaaaaatagaaataata |
36256820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 151 times since January 2019
Visitors: 5832