View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0779_low_7 (Length: 455)
Name: NF0779_low_7
Description: NF0779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0779_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 378
Target Start/End: Complemental strand, 43532494 - 43532131
Alignment:
| Q |
13 |
aatatgaaggcttctaaggaaaactcaaaatcaaatnnnnnnncattaggccacattcaacagnnnnnnn-atgagtaagaatcgaacgctgtttttcag |
111 |
Q |
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| T |
43532494 |
aatatgaaggcttctaaggaaaactcaaaatcaaataaaaaaacattaggccacattcaacagttttttttatgagtaagaatcgaacgctgtttttcag |
43532395 |
T |
|
| Q |
112 |
aattagcaacacttataagttatatacagtactatgcaccaaccacattgccagatcctgatgattacatttggcagctaaaatatggaagtaatgaaat |
211 |
Q |
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| T |
43532394 |
aattagcaacacttataagttatataca---ctgtgcaccaaccacattgccagatcctgatgattacatttggcagttaaaatatggaagtaatgaaat |
43532298 |
T |
|
| Q |
212 |
tagcaaaggttgctagattttttcgccatcgctcactttttagtcttattatgtcaggctggtaaaactataataacaacaatccatcaaccatcaagca |
311 |
Q |
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| T |
43532297 |
tagcaaaggttgctagatattttcgccatcgctcactttttagtcttattatgtcaggctggtaaaactataataacaacaatccatcaaccatcaagca |
43532198 |
T |
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| Q |
312 |
gactttttcacaagtttgataagttgatccttttgggaaaagggaacttactttactttggaaaagc |
378 |
Q |
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| T |
43532197 |
gactttttcacaagtttgataagttgatccttttgggaaaagggaacttactttactttggaaaagc |
43532131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 368
Target Start/End: Complemental strand, 43525625 - 43525545
Alignment:
| Q |
288 |
caacaatccatcaaccatcaagcagactttttcacaagtttgataagttgatccttttgggaaaagggaacttactttact |
368 |
Q |
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| T |
43525625 |
caacaatccatcagccatctagtggactctttcacaaatttgacaagttgatcctattgggaaaagggaacttgctttact |
43525545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 287 - 378
Target Start/End: Original strand, 24127097 - 24127188
Alignment:
| Q |
287 |
acaacaatccatcaaccatcaagcagactttttcacaagtttgataagttgatccttttgggaaaagggaacttactttactttggaaaagc |
378 |
Q |
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|||||||| || ||||||||||| ||||| |||||||| ||||| |||||||||||| | |||||||||| || ||||||||||||||||| |
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| T |
24127097 |
acaacaattcaccaaccatcaagtagactctttcacaaatttgacaagttgatccttcttggaaaagggagtttgctttactttggaaaagc |
24127188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 378
Target Start/End: Original strand, 24145426 - 24145517
Alignment:
| Q |
287 |
acaacaatccatcaaccatcaagcagactttttcacaagtttgataagttgatccttttgggaaaagggaacttactttactttggaaaagc |
378 |
Q |
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|||||||| || ||||||||||| ||||| |||||||| ||||| |||||||||||| | || ||||||| | ||||||||||||||||| |
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| T |
24145426 |
acaacaattcaccaaccatcaagtagactctttcacaaatttgacaagttgatccttcttgggaaagggagttcgctttactttggaaaagc |
24145517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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